Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C19
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39666-3|AAA80410.2|  178|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    26   9.3  
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      26   9.3  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    26   9.3  

>U39666-3|AAA80410.2|  178|Caenorhabditis elegans Hypothetical
           protein K04E7.1 protein.
          Length = 178

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 168 TAYIIPFRTYLGRNTCKWNHNSFI 239
           T Y + F  Y+  + C W H SF+
Sbjct: 44  TLYAVSFVVYVTNSICSWLHISFV 67


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical protein
            F09E8.3 protein.
          Length = 1369

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 37   IFLSNQSFSGSSFLNQNKSCTLF 105
            IF S QSF G+S    N  C++F
Sbjct: 1198 IFNSQQSFPGNSMGTTNPDCSIF 1220


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 37   IFLSNQSFSGSSFLNQNKSCTLF 105
            IF S QSF G+S    N  C++F
Sbjct: 1198 IFNSQQSFPGNSMGTTNPDCSIF 1220


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -3

Query: 254 VSDVRNETIMIPFTRVPAEICPERNNIGCYLICK 153
           V    NETI IP       I P  NN  CY + K
Sbjct: 168 VERTENETIAIPRLSTAQFIAPVWNNSMCYGVLK 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,346,502
Number of Sequences: 27780
Number of extensions: 125452
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)