Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C16
         (759 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4A6X5 Cluster: Putative uncharacterized protein; n=2; ...    38   0.27 
UniRef50_Q4FND0 Cluster: Tryptophan synthase alpha chain; n=2; C...    33   5.8  
UniRef50_Q7REW6 Cluster: Putative uncharacterized protein PY0494...    33   7.7  

>UniRef50_Q4A6X5 Cluster: Putative uncharacterized protein; n=2;
           Mycoplasma synoviae 53|Rep: Putative uncharacterized
           protein - Mycoplasma synoviae (strain 53)
          Length = 426

 Score = 37.9 bits (84), Expect = 0.27
 Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 334 ENNISLITHIKSVFNKKR-KALKFLNKVNRINKILDLGFDY 453
           +N++SLI   K++ + K+ K  K+LN++N I+K+  + FDY
Sbjct: 267 KNSVSLIYDAKNILSSKQVKIFKYLNQINTISKLAIMNFDY 307


>UniRef50_Q4FND0 Cluster: Tryptophan synthase alpha chain; n=2;
           Candidatus Pelagibacter ubique|Rep: Tryptophan synthase
           alpha chain - Pelagibacter ubique
          Length = 265

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +1

Query: 301 LMPMIMKKIENENNISLITHIKSVFNKKRKALKFLNKVNRINKILDLGFDYN 456
           L+ +  KK++ E   +L+T+  +  + K+K+L+ L  + +   I ++GF +N
Sbjct: 3   LINLAFKKVKTEKRPALLTYTVAGDSTKKKSLEILKSIAKYADICEIGFPHN 54


>UniRef50_Q7REW6 Cluster: Putative uncharacterized protein PY04947;
           n=5; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY04947 - Plasmodium yoelii yoelii
          Length = 825

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +1

Query: 286 EFV*ILMPMI-MKKIENENNISLITHIKSVFNK--KRKALKFLNKVNRINKI 432
           EF+ I  P+I MKK  NEN +S++T+  S++N       L  L K  RINKI
Sbjct: 339 EFIDIYSPIILMKKNANENILSILTYSGSIYNYDISEDVLNEL-KEKRINKI 389


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,942,403
Number of Sequences: 1657284
Number of extensions: 8822130
Number of successful extensions: 16462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16437
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)