Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C16
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    33   0.29 
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    28   6.3  
AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical ...    28   8.3  

>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 337 NNISLITHIKSVFNKKRKALKFLNKVNRINKILDLGFDYNGR 462
           NN   +      F K +K L+FLNK+ +I  +++   DY G+
Sbjct: 562 NNFKHLKAFVEKFKKFKKDLEFLNKIKKIEPVINFIKDYRGK 603


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 167 TVEKGILI*RHNSRQLHTNQNNKPRKQVNIYRYLKITNLLNSYKY 301
           TVEK   +  +N    + NQ N+P+    I R +KI N +    Y
Sbjct: 361 TVEKLQEVLSNNLHDYYVNQMNQPKYSKRIARMMKINNTVEQCLY 405


>AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical
           protein C24D10.4 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 379 KKRKALKFL-NKVNRINKILDLGFDYNGRR 465
           ++R+  K L N   RIN+IL+ G D NG+R
Sbjct: 21  RQRRLAKILGNSEGRINRILNNGGDENGKR 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,218
Number of Sequences: 27780
Number of extensions: 221790
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)