Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_C12
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 78 1e-15
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 65 8e-12
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 38 0.001
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 3.6
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 27 3.6
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 6.3
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 6.3
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 26 6.3
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 25 8.4
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 8.4
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 8.4
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 25 8.4
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 78.2 bits (184), Expect = 1e-15
Identities = 55/146 (37%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Frame = -2
Query: 630 EQEVLTWISDVLGEPLPNGAYE--DVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMEN 457
E+E WI + L L N + D L+ GVILC++ K A G+ + +E F MEN
Sbjct: 6 EKEAREWIEETLHTKL-NAQLDLLDQLQSGVILCRIC-KEALGANIRYKESNMPFVQMEN 63
Query: 456 IQRF-QAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKM 280
I F A + VP +++FQT+DLFERRN QV +++ R K LGPK+
Sbjct: 64 ISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKL 123
Query: 279 ADKNERTFTEEQLRAHNAELN-LQMG 205
A+K R F+ +Q R +N LQ G
Sbjct: 124 AEKKPRVFSAQQQREFREGVNSLQYG 149
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 65.3 bits (152), Expect = 8e-12
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = -2
Query: 624 EVLTWISDVLGEPL-PNGAYEDVLRDGVILCKLANKLAPGSVKKI-QERGTNFQLMENIQ 451
E WI + LG L P +E LR+GV+L L K P + KI F+ +NI
Sbjct: 46 EAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNIN 105
Query: 450 RFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYAL 337
+F I G+PE F+ D++E +N+P+V C++AL
Sbjct: 106 KFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 38.3 bits (85), Expect = 0.001
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = -2
Query: 624 EVLTWISDVLGEPLPN-GAYEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMEN--- 457
E W+ + N + D L +G +LC+LA K P + R +Q+ E
Sbjct: 69 EAKKWLEEETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPR---YQISERNTV 125
Query: 456 -IQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYAL 337
+ F + G+ F+T DL R NIP+V CL+AL
Sbjct: 126 YLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 500 KKYKREGPTSSSWR--TFKGSKRQSRNTEYQKKK 405
+KY R+ PT SS R T GS ++ + KKK
Sbjct: 1215 RKYNRKAPTKSSTRQTTLDGSISNTKKSSRTKKK 1248
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 461 SMSWKLVPLSCIFFTDPGANLLANLQRITPSLSTSSYAPFG 583
S+++KL + DP LAN +++ SLS +Y P G
Sbjct: 33 SLAYKLYSMLRSLKLDPHFMELANPKKVDSSLSYENYQPIG 73
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 524 LANLQRITPSLSTSSYAPFGSGSPKTSEIQ 613
L+N +TPS S S Y P +T +Q
Sbjct: 689 LSNFNSVTPSSSASLYPPLIPSEARTPSVQ 718
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -2
Query: 321 KHPEFTGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGF 166
+ F G G + + + R R N G++ G S SG+GGF
Sbjct: 565 RESSFGGNGRGGRYSGRGGRGGNAYGARDFRRPTNSSSGYSSGPSYSGYGGF 616
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 212 KWASIRAPPSPVMVASVTPATCKLLLNFSQYF 117
++ IR+PP+ V + S+TP NF Q +
Sbjct: 46 RYTKIRSPPTRVSIESITPKQRFPAPNFEQAY 77
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 120 FSTLISVFVHGRIWLNDFFTF 58
FST I VHG WL D + F
Sbjct: 140 FSTPIPHMVHGIPWLQDLYIF 160
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 350 HNVTWGMLRLSKRSAVWN 403
HN WG R + +A+WN
Sbjct: 491 HNFVWGRFRELEHAAMWN 508
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 671 DFACTQCLPETRTKNKRFSLGSLM-FWESRYQMAHTKTCLGTV*SFAN 531
+F C CL E F + +L +E +Y+ +H K L + F+N
Sbjct: 117 EFTCENCLQEGVAYT--FEMVALQCMYERKYRQSHEKATLADLEQFSN 162
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 430 LDCRLEPLNVLHELEVGPSLLYFFH 504
LD LEPL LHE + L+FF+
Sbjct: 238 LDAYLEPLVHLHEYSRRSNTLFFFY 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,266
Number of Sequences: 5004
Number of extensions: 78572
Number of successful extensions: 213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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