Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C09
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    28   1.2  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   4.9  
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    26   4.9  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.9  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   8.6  

>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 152 YCTCCYPQHASSDYRYRVNS-NMLRQMYSNYI*TYYVTFRLSRKHIRKV 9
           +C CC P +A +D R   N+ NM+ +         +V F L R++ +K+
Sbjct: 25  FCLCCNPWYAGADTRQLANAFNMIPKSEGQKF-EIWVLFLLVRQYHQKI 72


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -3

Query: 525 SNVFFKKNIYIFFVFL*LRITPKLSLVF--VSRRLNLNYLYDLISWLLF*FNYF 370
           SN FFKK+I+ FFV+   +    +S VF  +   LN   +  L+S+LL  F+ F
Sbjct: 65  SNTFFKKSIF-FFVYYCKQALEFISTVFSIIKFLLNRRKVSFLLSFLLL-FSLF 116


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 553  CHISKSFVAE*CFF*KEYLYIFCIFVIKNNTEAI 452
            C ++K +VAE   +  E +  FC  V++NN + +
Sbjct: 999  CDLAKQYVAEQSQYDLERIRSFCSEVVENNLDLV 1032


>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 475 LQKYKKYINILFKKNITLPQ 534
           L+K +KY+ ++F K  TLP+
Sbjct: 111 LRKRRKYVGVVFDKETTLPR 130


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 475 LQKYKKYINILFKKNITLPQNFLKCDRIF 561
           LQK++K  + +F+K I +P+N +  D IF
Sbjct: 825 LQKFEKNDSQIFRKTIIIPEN-ISIDDIF 852


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 426 NLNYLYDLISWLLF*FNYFQCYE*VHYYSFRGH 328
           N  Y +  +SWL F F  F  Y  + YY    H
Sbjct: 137 NRFYAHVFLSWLFFGFTIFIIYRELRYYVIFRH 169


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 71  CTFDEACCC*LYICNLTKHVVDNNMYNNRLGIL 169
           C F +     +Y  N T+H +  N YN +L IL
Sbjct: 3   CAFTKELKDEIYQKNYTEHEILQNAYNGKLDIL 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,605
Number of Sequences: 5004
Number of extensions: 55650
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)