Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C06
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.2  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 312 SHFNPEHKDHGHPNDVNRHV 253
           S F+ + KD G PND N ++
Sbjct: 345 SSFDFQSKDQGPPNDGNGNI 364


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -2

Query: 384 LPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHP 274
           L P  +      K DLS   L+ G+ F      HG P
Sbjct: 404 LTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPP 440


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -2

Query: 384 LPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHP 274
           L P  +      K DLS   L+ G+ F      HG P
Sbjct: 404 LTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPP 440


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 5/27 (18%), Positives = 15/27 (55%)
 Frame = -1

Query: 670 ECKTTASTYLIRLXIGNLNEFGRPIFF 590
           +C+   + +++   +G +N F  P+ +
Sbjct: 651 DCQPGVTAFIVTSWLGYMNSFVNPVIY 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,911
Number of Sequences: 438
Number of extensions: 4001
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)