Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C05
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   4.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.4  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 270 GALVTVRVAARPCHVNHS 217
           GALVT+ V    C VN S
Sbjct: 181 GALVTLSVQLLSCEVNGS 198


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 84  VCYISTDCKRASPSP 128
           VC + TD  ++ PSP
Sbjct: 607 VCVLKTDTNQSCPSP 621


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 110 ASIAQPASA*EGIDTYTLFIIQIWCLLFPYYL 205
           ++IA+P           LFI+ IW    P+ L
Sbjct: 147 STIARPLDGKLSRGQVILFIVLIWTYTIPWAL 178


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 29  QCTQI*SLLHFPLSTIRRSML 91
           QC Q  SLL    ST+ RS++
Sbjct: 691 QCPQTASLLSSTHSTLARSLM 711


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,438
Number of Sequences: 438
Number of extensions: 2427
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)