Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C02
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   2.3  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   7.0  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   9.2  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    25   9.2  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   9.2  
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    25   9.2  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 24  LEHVDNRLYFTGFLYRQI*LSPMIPCWFQFEFLKLHE*LHRIKCA*ML 167
           L ++ +R+Y  G  YR I +  M+  W Q    +LH+ L   K A +L
Sbjct: 214 LRNIQSRIYSAGEAYRLILIGQMVNRWRQKTRERLHQKLRFQKNAFLL 261


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 685 KDFLHFLCNCMERXXXXXXXLRNGCKLPFLSTFLSLRIVDINYFL 551
           K F HFLC C+++        +     P++  F  +  VD+  FL
Sbjct: 314 KSFQHFLCVCLDKDKTRRPGPQKMLTHPWVKAFERIH-VDMEEFL 357


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 739 KRNTMKWFSFKPLIQFFFKDFLHF 668
           KR+++  F + PL+  F K F+H+
Sbjct: 334 KRSSLIMFDYYPLVLIFCKLFIHY 357


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 572 NPQREKSR*KWQFTSVSKLK 631
           NPQ+E+ +  W++  VSK K
Sbjct: 120 NPQQERMKIAWRYEQVSKTK 139


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 178 VDDVAMKPQKIDNRKYTITFRFSRYKLNIKNIAI*IDNSMNIEEKKNTNAVL 333
           +D++ +K  +  N+KY      S    N+K  ++  DN +++E  KN N  L
Sbjct: 596 IDELKLKLNEA-NKKYQ-ELAISFENSNVKTQSVEPDNGLSLEALKNENQTL 645


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 597 KNGSLHPFRS*SKNNNYRSIQLQRKCRKSLKKN*INGLKENHFIVFLFTAFV 752
           K GSL  F    +N   R+I  +RK R  LKK  ++ L  N  I  L  ++V
Sbjct: 54  KCGSLFIF---GRNIKLRTISSERKARTDLKKGEVSRLGTNLEINCLVCSYV 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,049
Number of Sequences: 5004
Number of extensions: 63319
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)