Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C02
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    30   1.6  
U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine rec...    29   2.8  
Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical p...    29   4.9  
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical
           protein T20F10.5 protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 260 FNLYRENLNVIVYFRLSIFCGFIATSSTKTLKHLCTLNS 144
           F L   N +     + +IF  F+AT+ST++L+H+  LNS
Sbjct: 53  FTLIAMNSSKFSTQQWNIFSNFLATASTQSLRHVRLLNS 91


>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 320 VFFFSSIFMELSIYIAIFLMFNLYRENLNVIVYFRLSIFCGFIATSSTKTL 168
           + FF S FM+L+++   F++   Y  +++      ++ FC      + KTL
Sbjct: 64  MIFFDSSFMKLNVHHVAFILLICYDASIHAHAIITINRFCAVFLPIAYKTL 114


>U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 34 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 431 ATVIARLLPICSFAAIQNNKL**LSHISFETRDKTAFVFFFSSIFMELSI 282
           A +  RLL IC+  AI  ++L  LS++  ++  +   V F  SI + + +
Sbjct: 112 ANIFIRLLMICTNCAITIDRLITLSNVGIKSTAQRGIVLFILSILVSVGV 161


>Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 247 RYKLNIKNIAI*IDNSMNIEE--KKNTNAVLSRVSNEIC 357
           RYKL++KN  +  D + N+E   + N +A L+  S  +C
Sbjct: 238 RYKLDLKNSIVIFDEAHNLESICESNASAELTSTSIALC 276


>Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 247 RYKLNIKNIAI*IDNSMNIEE--KKNTNAVLSRVSNEIC 357
           RYKL++KN  +  D + N+E   + N +A L+  S  +C
Sbjct: 238 RYKLDLKNSIVIFDEAHNLESICESNASAELTSTSIALC 276


>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 181  DDVAMKPQKIDNRKYTITFRFSRYKLNIKNIAI*IDNSMNIEE 309
            D++   P K D RK     + ++   N+ +  I +DN +N+EE
Sbjct: 1031 DEIEEVPSKTDLRKEAAPSKTNKRNANLISTDIAVDNDVNMEE 1073


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 181  DDVAMKPQKIDNRKYTITFRFSRYKLNIKNIAI*IDNSMNIEE 309
            D++   P K D RK     + ++   N+ +  I +DN +N+EE
Sbjct: 1031 DEIEEVPSKTDLRKEAAPSKTNKRNANLISTDIAVDNDVNMEE 1073


>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 663 VIVWNGNYYFYFNFETDVNCHFYRLFSL 580
           +  W+   +++   +TDV CH Y L ++
Sbjct: 311 IATWSNTCFYHNQLKTDVKCHEYSLHTI 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,910,410
Number of Sequences: 27780
Number of extensions: 352281
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)