Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C02
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    27   0.20 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 262 IKNIAI*IDNSMNIEEKKNTNAVLSRVSNEI--CDN 363
           +  + I  DNS  + +KK  N ++ R+ N++  C+N
Sbjct: 75  LNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECEN 110


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 723 SGFLLNH*FSFSLKIFYIFFVIVWNGNYYF 634
           SG+ LNH ++   K+ Y    I  N  Y+F
Sbjct: 206 SGWYLNHDYNLENKLIYFIEDIGLNTYYFF 235


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 723 SGFLLNH*FSFSLKIFYIFFVIVWNGNYYF 634
           SG+ LNH ++   K+ Y    I  N  Y+F
Sbjct: 206 SGWYLNHDYNLENKLNYFIEDIGLNTYYFF 235


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 529 YFLELRYLIEIYH*ISCVI*RRSAIVE-SQTCDLRP 425
           +FL +  ++ +Y  ISCVI  R   +E +++ ++RP
Sbjct: 207 FFLPMLVMLYVYGRISCVIASRHRNLEATESENVRP 242


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 403 SVVSPQYKTINSNNYHIFRSKHATRPHSCFFFLQY 299
           S +S  YK  N NNY+ + + +    +   ++  Y
Sbjct: 316 SSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNY 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,528
Number of Sequences: 438
Number of extensions: 4718
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)