Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B18
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.3  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    25   8.3  

>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 598 TLXTPASRTTWPTPALGTSRVRLKPAWEVPSPGST 494
           T+ +P S TT PTP   T++     A E  + G+T
Sbjct: 565 TIPSPGSATTKPTPGSATTKPTPVSATEEHAAGTT 599



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 598 TLXTPASRTTWPTPALGTSRVRLKPAWEVPSPGSTLSS 485
           T  TP S TT PTP   T           P+ G+T ++
Sbjct: 574 TKPTPGSATTKPTPVSATEEHAAGTTKPAPAAGATATA 611


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 583 ASRTTWPTPALGTSRVRLKPAWEVPSPGSTLSSNPTVPSALWTTPPMT*TDS 428
           AS T   T  + TS   +  + ++P+  STLSS  +  S+       T TDS
Sbjct: 238 ASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETSSTLTDS 289


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 234 IRWRSAQRGHSFFVWSHIRRPHGSCYPRLPSF 139
           + W  AQ+G   F  S +R P   C+    SF
Sbjct: 345 VEWSCAQKGIDQFAHSFLRTPMFDCFISSESF 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,315
Number of Sequences: 5004
Number of extensions: 30776
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)