Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B16
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.8  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   4.2  
EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    22   5.5  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.6  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   9.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 439 GAKVKSVCTFEGNTLKQVQKAPDG 368
           G      C FEGN +K +    DG
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDG 365


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 519 LYSSPSLRSSTVGVTALAALRVIRPTPELRANLNSPLSFSPDLLSGSRFRS 671
           + S PSL  + +       L ++  +  L   + S  S SPD + G   +S
Sbjct: 167 ILSDPSLMDADLEFKGAQDLSLLHVSDSLSPGIYSEQSLSPDTVFGDDGKS 217


>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = -2

Query: 163 FIVKLILVFTSVIVYRSNCKSEWR*RN*NKFSDHGNN 53
           F++ +++ F  V   + N  ++W  R+ +      NN
Sbjct: 5   FLIVVLIAFVGVCTAQLNFSTDWGKRSGSSAGSDANN 41


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 275 PVKGLYSEVGSRCRRFTNI 219
           P+ GLY++  +  R FT++
Sbjct: 73  PLPGLYTKSANTIRSFTHV 91


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 570 AALRVIRPTPELRANL 617
           A L  I  +PELRANL
Sbjct: 110 AILAPIAASPELRANL 125


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 585 SPAKPPTLSPRP 550
           SP  PPT SP P
Sbjct: 94  SPTTPPTPSPPP 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,691
Number of Sequences: 336
Number of extensions: 2936
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)