Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_B15
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 27 2.9
11_01_0788 + 6599962-6602700 27 3.8
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 26 6.6
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 26 6.6
02_02_0631 - 12397517-12398452,12398693-12398819,12398971-123991... 26 6.6
05_03_0087 + 8286700-8288088 26 8.7
03_04_0134 - 17593449-17594702 26 8.7
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 26 8.7
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 98 GAFLFKGHLGSSQWTSAFLNILLPPQV 178
G F F+G G +W A ++ L+PP++
Sbjct: 246 GVFKFEGWRGKHKWKKADVDDLVPPKI 272
>11_01_0788 + 6599962-6602700
Length = 912
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 303 HQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHT-KDTCGG 166
H+ KLK E N+ F+L T + +K + E L H D C G
Sbjct: 327 HRLKLKPLEHNDAFDLFCKKTFYNSMHSKCPQDLEKLAHNIVDRCEG 373
>02_05_0982 -
33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 279 EFNNQFELHSDATSNENNSTKASKSYEXLKHTKDTCG 169
EF++ L S + ++ TKASK + K+ +CG
Sbjct: 531 EFDDDVVLASLVHKSRSSKTKASKMHSSTKNVDGSCG 567
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 121 MTFKKKSAESEAKNRNEKTGKLKKNEHTGKQRK 23
+ KKK + + K + +K K KKN+ K++K
Sbjct: 65 VVMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKK 97
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 112 KKKSAESEAKNRNEKTGKLKKNEHTGKQRK 23
KKK + + K +N+K K KK + K++K
Sbjct: 77 KKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
>02_02_0631 -
12397517-12398452,12398693-12398819,12398971-12399154,
12399303-12399395,12400029-12400077,12400565-12400624,
12400689-12400730,12400840-12400992,12401075-12401206,
12401313-12401408,12401936-12402079,12402234-12402308,
12403896-12404021
Length = 738
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 174 CGGKRIFKKADVHCDEPK 121
C RI ++ DV+CD PK
Sbjct: 507 CQDSRILRENDVYCDSPK 524
>05_03_0087 + 8286700-8288088
Length = 462
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 118 TFKKKSAESEAKNRNEKTGKLKKNEH 41
T K+K S+ KN+ K KK+EH
Sbjct: 266 TSKRKKKSSKPKNKKNGESKEKKDEH 291
>03_04_0134 - 17593449-17594702
Length = 417
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -3
Query: 324 GRPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSY 202
GRP + D+ +N+ + H DA S+++ S Y
Sbjct: 211 GRPWNSRPSDEYSSLMYNSSYHHHHDAVSDDDLELSLSSPY 251
>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 294 KLKKPEFNNQFELHSDAT-SNENNSTKASKSYEXLKHTKDTCGGKRIFKKADVHCDEP 124
K+ K F S A +++ N AS+ L H+ GG R A+ H DEP
Sbjct: 1256 KISKSNFQEMTHTRSMAALTDDANGEGASQPRTGL-HSSGRAGGSRRAATAEQHDDEP 1312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,603,730
Number of Sequences: 37544
Number of extensions: 99195
Number of successful extensions: 313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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