Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_B15
(335 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB073711-1|BAC16755.1| 372|Homo sapiens phosphatidylserine rece... 29 2.7
AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic su... 28 6.2
AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic su... 28 6.2
AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic su... 28 6.2
AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic su... 28 6.2
AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta cat... 28 6.2
AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta cat... 28 6.2
AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta cat... 28 6.2
AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta cat... 28 6.2
AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta cat... 28 6.2
AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta cat... 28 6.2
AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta pro... 28 6.2
BC006108-1|AAH06108.1| 931|Homo sapiens G patch domain containi... 28 8.2
AL834465-1|CAD39124.1| 932|Homo sapiens hypothetical protein pr... 28 8.2
AK001068-1|BAA91489.1| 483|Homo sapiens protein ( Homo sapiens ... 28 8.2
AF434677-1|AAN63596.1| 931|Homo sapiens evolutionarily conserve... 28 8.2
>AB073711-1|BAC16755.1| 372|Homo sapiens phosphatidylserine
receptor beta protein.
Length = 372
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 252 SDATSNENNSTKASKSYEXLKHTKDTCGGK 163
SD++S+ ++S+ +S S + +DTCGG+
Sbjct: 340 SDSSSDSSSSSSSSSSDSDSERIRDTCGGR 369
>AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic
subunit of DNA polymerase zeta (yeast) protein.
Length = 3052
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 593 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 639
>AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic
subunit of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 671 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 717
>AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic
subunit of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 671 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 717
>AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic
subunit of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 671 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 717
>AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 2 protein.
Length = 3052
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 593 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 639
>AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 1 protein.
Length = 3052
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 593 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 639
>AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 671 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 717
>AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3052
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 593 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 639
>AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 671 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 717
>AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 671 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 717
>AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta
protein.
Length = 3052
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 321 RPIPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKD 178
R +P + ++K E ++ F +H NEN K S ++ L H+K+
Sbjct: 593 RQVPSRKYTNIRKIEKDSPF-IHMHRHPNENTLGKNSFNFSDLNHSKN 639
>BC006108-1|AAH06108.1| 931|Homo sapiens G patch domain containing
1 protein.
Length = 931
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 109 KKSAESEAKNRNEKTGKLKKNEHTGKQR 26
K A+ E + + EK K +K++H GKQ+
Sbjct: 860 KHKAKKEHRRKKEKKKKHRKHKHKGKQK 887
>AL834465-1|CAD39124.1| 932|Homo sapiens hypothetical protein
protein.
Length = 932
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 109 KKSAESEAKNRNEKTGKLKKNEHTGKQR 26
K A+ E + + EK K +K++H GKQ+
Sbjct: 861 KHKAKKEHRRKKEKKKKHRKHKHKGKQK 888
>AK001068-1|BAA91489.1| 483|Homo sapiens protein ( Homo sapiens
cDNA FLJ10206 fis, clone HEMBA1004972. ).
Length = 483
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 109 KKSAESEAKNRNEKTGKLKKNEHTGKQR 26
K A+ E + + EK K +K++H GKQ+
Sbjct: 412 KHKAKKEHRRKKEKKKKHRKHKHKGKQK 439
>AF434677-1|AAN63596.1| 931|Homo sapiens evolutionarily conserved
G-patch domain containing protein protein.
Length = 931
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 109 KKSAESEAKNRNEKTGKLKKNEHTGKQR 26
K A+ E + + EK K +K++H GKQ+
Sbjct: 860 KHKAKKEHRRKKEKKKKHRKHKHKGKQK 887
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,155,135
Number of Sequences: 237096
Number of extensions: 582011
Number of successful extensions: 1313
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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