Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B15
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81123-5|CAB76411.2|  393|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z50071-9|CAA90404.3|  393|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    28   1.4  
Z29117-9|CAA82381.1|  182|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z66499-8|CAI70408.1|  189|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z66499-7|CAA91298.2|  407|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U41538-7|AAP31430.1|  465|Caenorhabditis elegans Intermediate fi...    27   4.4  
U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate fi...    27   4.4  
Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U23168-8|AAC38809.2|  153|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical ...    26   5.8  
Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AF125964-7|AAD14750.1|  350|Caenorhabditis elegans Hypothetical ...    26   7.7  

>Z81123-5|CAB76411.2|  393|Caenorhabditis elegans Hypothetical
           protein T07D4.1 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 152 LNILLPPQVSFVCLXFS*DLEAFVLLFSFDVASLCNSNWLL 274
           + +L+   VSF  L F     A +L  SF   ++CNSNW +
Sbjct: 299 VRLLVAVVVSFALLTFP--HHARLLYTSFQTGTICNSNWTM 337


>Z50071-9|CAA90404.3|  393|Caenorhabditis elegans Hypothetical
           protein T07D4.1 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 152 LNILLPPQVSFVCLXFS*DLEAFVLLFSFDVASLCNSNWLL 274
           + +L+   VSF  L F     A +L  SF   ++CNSNW +
Sbjct: 299 VRLLVAVVVSFALLTFP--HHARLLYTSFQTGTICNSNWTM 337


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical protein
            C32E12.4 protein.
          Length = 1553

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 112  KKKSAESEAKNRNEKTGKLKKNEHTGKQRK 23
            KKK  E E K R EK  ++KKN+   ++ K
Sbjct: 1011 KKKQEEEEEKKRKEKELEMKKNKEEEEKLK 1040


>Z29117-9|CAA82381.1|  182|Caenorhabditis elegans Hypothetical
           protein C48B4.9 protein.
          Length = 182

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 151 FEYSFTTTSVFRMFKXFIGLGSF 219
           FEY+F    VFR F  F+ L SF
Sbjct: 43  FEYNFVGDLVFRTFVIFLSLTSF 65


>Z66499-8|CAI70408.1|  189|Caenorhabditis elegans Hypothetical
           protein T01B7.5b protein.
          Length = 189

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -2

Query: 112 KKKSAESEAKNRN--EKTGKLK-KNEHTGKQRK*HSV 11
           K+K+++  AKNR   E+ GK K K   T  +RK H++
Sbjct: 116 KRKASDKVAKNREYAERRGKKKAKTSKTKNRRKVHAI 152


>Z66499-7|CAA91298.2|  407|Caenorhabditis elegans Hypothetical
           protein T01B7.5a protein.
          Length = 407

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -2

Query: 112 KKKSAESEAKNRN--EKTGKLK-KNEHTGKQRK*HSV 11
           K+K+++  AKNR   E+ GK K K   T  +RK H++
Sbjct: 334 KRKASDKVAKNREYAERRGKKKAKTSKTKNRRKVHAI 370


>U41538-7|AAP31430.1|  465|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform b protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 246 ATSNENNSTKASKSYEXLKHTKDTCGGKRIFKKADVHCDEPK*PLKRKAPRVK 88
           A+S E+     S   E LKH  D        K+    CD+ K  LK +  R++
Sbjct: 143 ASSLEHRQRVRSDKKEQLKHLSDLESETAYIKRLINDCDDEKSHLKTEISRIR 195


>U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform a protein.
          Length = 575

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 246 ATSNENNSTKASKSYEXLKHTKDTCGGKRIFKKADVHCDEPK*PLKRKAPRVK 88
           A+S E+     S   E LKH  D        K+    CD+ K  LK +  R++
Sbjct: 143 ASSLEHRQRVRSDKKEQLKHLSDLESETAYIKRLINDCDDEKSHLKTEISRIR 195


>Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical
           protein F11A10.7 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -2

Query: 118 TFKKKSAESEAKNRNEKTGKLKKNEHTGKQRK 23
           T KK+++  + KN+NE TGKL K + + K+ +
Sbjct: 333 TAKKRTSHGK-KNQNEITGKLHKFKFSTKKER 363


>U23168-8|AAC38809.2|  153|Caenorhabditis elegans Hypothetical
           protein B0228.6 protein.
          Length = 153

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 118 TFKKKSAESEAKNRNEKTGKLKKNEHT 38
           TF+  S   + K R  KT +LK+NE T
Sbjct: 8   TFEFVSETGQIKKRGSKTSELKQNETT 34


>AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical
           protein F57C9.6 protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 252 YVIQIGY*ILVFLIYLDVFVVSAGRIHL 335
           YV+ IG  ILV+ +YL  + V  G +HL
Sbjct: 284 YVLMIGSVILVYSVYLTTYAVIQG-MHL 310


>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 112 KKKSAESEAKNRNEKTGKLKKNEHTGKQRK 23
           ++K  E   KN+ E T K+KK +   K +K
Sbjct: 235 ERKEKEKVEKNKMEMTEKIKKKDEDEKAKK 264


>AF125964-7|AAD14750.1|  350|Caenorhabditis elegans Hypothetical
           protein W03G1.2 protein.
          Length = 350

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 109 KKSAESEAKNRNEKTGKLKKNEHTGKQ 29
           KKS+  + KN NEK  K K   H  +Q
Sbjct: 6   KKSSRRKVKNINEKKKKSKARSHKKQQ 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,085,912
Number of Sequences: 27780
Number of extensions: 101904
Number of successful extensions: 427
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)