Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B15
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    33   0.001
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   5.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   7.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 32.7 bits (71), Expect = 0.001
 Identities = 21/63 (33%), Positives = 36/63 (57%)
 Frame = -3

Query: 309 QKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEXLKHTKDTCGGKRIFKKADVHCD 130
           ++H+D L     N    +HS+A++N N+ST + +S E  K T      KR  +K++ HC+
Sbjct: 729 RQHRDSLSPRVENRSAIVHSEASANANSSTSSEESREE-KATTSLEAEKR--EKSE-HCE 784

Query: 129 EPK 121
           + K
Sbjct: 785 KGK 787


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 251 LCNSNWLLNSGFFN 292
           +C+  W+L+SG  N
Sbjct: 129 MCDRLWVLDSGLIN 142


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 231 FHLTSHHYVIQIGY*ILVFLI 293
           +H++ H   I +G  + VFLI
Sbjct: 263 YHVSDHKAAITVGVIMGVFLI 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,366
Number of Sequences: 438
Number of extensions: 1342
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)