Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B14
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    28   0.69 
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    28   0.69 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   1.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   1.2  
SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.8  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   4.8  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   6.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    24   8.5  

>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = -2

Query: 331 IVLMALAYVSAHKEAVTLCGRNLANARVAVCYGAEYVDKRTSGNTLFDDFEDVDLHGDWP 152
           I+   L+Y + HK    L    L  +R A+ Y    +   T+G+ +F      +L+ +WP
Sbjct: 220 ILTTCLSYFTEHKSVNLLY--KLVTSRQAIKYLEHILRTNTNGSKIFTKSPVKNLYLNWP 277

Query: 151 -WTGRRGALSADWTRYKRQGIVN 86
                 G+L  ++T + + G  N
Sbjct: 278 QLVLDYGSLLCNFTSFPKAGDQN 300


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -2

Query: 316  LAYVSAHKEAVTLCGRN-LANARVAVCYGAEYVDKRTSG---NTLFDDFEDVD 170
            L Y+ +H   V +   + + N  +  C+GA+Y D+R +      +FD+F++++
Sbjct: 1017 LRYLFSHSFLVIIFACSVILNLSLMFCFGAKYWDERQNNKFVGQVFDEFKNIE 1069


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 218 INVFCSITHCNPCVCKVPSTQSDCFLVR*DVS*RHQHYHHREFHVKN 358
           I  + +I  C+P   ++ S    C+L++ D+S  +  Y    +H+K+
Sbjct: 388 IEYYQTILDCDPKQGEIWSALGHCYLMQDDLSRAYSAYRQALYHLKD 434


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 120 SAERAPRRPVHGQSPCRSTSSKSSNN 197
           +A   P++P H Q+P  S+SS SS +
Sbjct: 118 NARDIPQQPSHSQNPSSSSSSSSSQS 143


>SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 93  IPWRL*RVQSAERAPRRPVHGQSPCRSTSSKSSNN 197
           +P R  R +SA +AP   +HG+   + T  K   N
Sbjct: 1   MPHRNDRRKSASKAPNAIIHGRVASKKTIKKQLRN 35


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 111 RVQSAERAPRRPVHGQSPCRSTSSKSSNN 197
           RV +  R P +P+  Q P   +SSK + N
Sbjct: 48  RVSTTRRTPSKPIRSQ-PLTPSSSKGAGN 75


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 210 HRETHYSMISKM*TCTAIGRGLAVEAPSPLTGPATSAKESSTNAVSNHAPPTY 52
           +R TH +   K     AI   ++ E    ++GP  + KE   N+ +N  PP +
Sbjct: 207 YRPTHRAAFRK----DAIAFDMSYEPLFCISGPYEALKEKFGNSFANGLPPVF 255


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 72  LKQHSLTIPWRL*RVQSAERAPRRPVHGQSPCRSTSSKSSNN 197
           +K H+ T+      ++ A R PRR   GQ   +ST+++ SNN
Sbjct: 478 VKDHAKTLLKEWESLEIAYRIPRRK-PGQVAPQSTNAEPSNN 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,971
Number of Sequences: 5004
Number of extensions: 33080
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)