Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B14
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998...    28   2.7  
02_05_0593 - 30217432-30218232                                         28   3.6  
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400...    27   6.2  
08_02_1162 - 24811327-24812162,24815969-24816028,24816526-248167...    27   6.2  
07_01_0173 - 1212858-1213805,1214982-1215642,1215699-1215724,121...    27   6.2  
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409...    27   8.2  
02_04_0172 - 20595357-20596129,20596994-20597138                       27   8.2  

>11_04_0169 +
           14397380-14397652,14398317-14398874,14399593-14399823,
           14399924-14400064,14401051-14401248,14401319-14401591,
           14401959-14401976
          Length = 563

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 159 SPCRSTSSKSSNNVFPDVRLSTYSAP*HTATLAFARFRPHRVTASLCAET*ANA 320
           +PC       S +  P    S+ SAP  ++  +F+R  P RV  ++ A T A A
Sbjct: 11  APCPHAHHHHSTSSLPSSSSSSTSAPSSSSRCSFSRGGPFRVHCAVTATTSAAA 64


>02_05_0593 - 30217432-30218232
          Length = 266

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 144 AVEAPSPLTGPATSAKESSTNAVSNHAPP 58
           A EAPS     AT +K +ST+A S H PP
Sbjct: 176 AAEAPSS----ATESKPNSTDASSKHGPP 200


>12_01_0505 -
           4005211-4005234,4005235-4005432,4005522-4006006,
           4006533-4006700,4007128-4007203,4007327-4007409,
           4007511-4007589,4007685-4007753,4008174-4008266,
           4008668-4008713,4009398-4009522
          Length = 481

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 7   FFFTIIW-LIFNNISRVRRWCM 69
           F   I+W L+ NNI  + RWC+
Sbjct: 431 FLADIVWTLLQNNIGNLNRWCL 452


>08_02_1162 -
           24811327-24812162,24815969-24816028,24816526-24816725,
           24817436-24817657,24817989-24818312,24818852-24818988
          Length = 592

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 144 AVEAPSPLTGPATSAKESSTNAVSNHAPPT 55
           A +A SPL G ++SAK  +    S+ +PP+
Sbjct: 537 ASDAASPLPGKSSSAKAKADEKKSSSSPPS 566


>07_01_0173 -
           1212858-1213805,1214982-1215642,1215699-1215724,
           1216037-1216121,1216382-1216404,1216463-1216465
          Length = 581

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/72 (27%), Positives = 28/72 (38%)
 Frame = +1

Query: 52  VRRWCMV*NSIR*RFLGACSGSSQRRGRLDGQSTANRRAGLHLRNHRIMCFPMSVYQRIL 231
           + + C +   IR R L   S    R GRLDGQ    R   + +      C P     +  
Sbjct: 35  IPKGCAIVPIIRYRLLLKTSMEEFRFGRLDGQPAKIRNVPIAVTPEGFWCCPSQAILQKS 94

Query: 232 LHNTLQPLRLQG 267
           + N  Q  R +G
Sbjct: 95  MKNQNQHARPKG 106


>09_03_0218 +
           13539481-13540082,13540171-13540276,13540645-13540960,
           13541187-13541263,13541269-13541895,13542783-13543112,
           13543442-13543747,13543824-13543896,13544004-13544089,
           13544219-13544396,13545311-13545756
          Length = 1048

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 206 RCPFINVFCSITHCNP 253
           +CPF    C+ T CNP
Sbjct: 213 KCPFCRNICNCTRCNP 228


>02_04_0172 - 20595357-20596129,20596994-20597138
          Length = 305

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 101 ALVAGPVSGEGASTASPRPIAV 166
           ++V GPV GEGA T SP P +V
Sbjct: 142 SMVDGPVMGEGAPT-SPSPTSV 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,520,193
Number of Sequences: 37544
Number of extensions: 232126
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)