Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_B14
(422 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical ... 31 0.45
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 29 1.4
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 29 1.4
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 29 1.4
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 29 1.4
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 1.8
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 1.8
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 28 2.4
Z77663-11|CAB01211.3| 324|Caenorhabditis elegans Hypothetical p... 27 5.5
AL032639-5|CAA21629.1| 342|Caenorhabditis elegans Hypothetical ... 27 5.5
Z79758-1|CAB61037.1| 340|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 26 9.7
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 26 9.7
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 26 9.7
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 26 9.7
U36199-1|AAA79337.1| 340|Caenorhabditis elegans CeMEF-2 protein. 26 9.7
U36198-1|AAA79336.1| 340|Caenorhabditis elegans CeMef-2 protein. 26 9.7
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 26 9.7
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 26 9.7
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 26 9.7
>AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical
protein Y40C5A.1 protein.
Length = 242
Score = 30.7 bits (66), Expect = 0.45
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 248 NPCVCKVPSTQSDCFLVR*DVS*RHQHYHHREFHVKNLFYYDLRCETMGRL 400
N + + PS S VR + + RH H+HH + ++N ++D C R+
Sbjct: 123 NVPIIRTPSQHSIHQSVRFNDNKRHHHHHHHD-SIRNFVHHDTPCRNCFRI 172
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 216 NGHRETHYSMISKM*TCTAIGRGLAVEAPSPLTGPATSAKESSTNAVSNH 67
N E M++K T T I G + P+P P ++ +SS++ +S+H
Sbjct: 25 NSQEENDCDMLAKPQTPTIIIPGHMDDTPNPAGSPHDASIKSSSSTISDH 74
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -2
Query: 406 HLQSSHCFTSEIIIKEIFNMKFTVMIVLMALAYVSAHKEAVTLCGRNLANARVAVCYG 233
H CF + I ++ +MK I L + HK + CGR+++ + A+C G
Sbjct: 1031 HFSQPWCFENFIQVR---SMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSG 1085
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -2
Query: 406 HLQSSHCFTSEIIIKEIFNMKFTVMIVLMALAYVSAHKEAVTLCGRNLANARVAVCYG 233
H CF + I ++ +MK I L + HK + CGR+++ + A+C G
Sbjct: 1031 HFSQPWCFENFIQVR---SMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSG 1085
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 216 NGHRETHYSMISKM*TCTAIGRGLAVEAPSPLTGPATSAKESSTNAVSNH 67
N E M++K T T I G + P+P P ++ +SS++ +S+H
Sbjct: 25 NSQEENDCDMLAKPQTPTIIIPGHMDDTPNPAGSPHDASIKSSSSTISDH 74
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 132 PSPLTGPATSAKESSTNAVSNHAPPTYS*NIVKY*PN 22
PSP P TSA+ S T+ + + PTYS Y P+
Sbjct: 1808 PSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPS 1844
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 132 PSPLTGPATSAKESSTNAVSNHAPPTYS*NIVKY*PN 22
PSP P TSA+ S T+ + + PTYS Y P+
Sbjct: 1815 PSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPS 1851
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 144 PVHGQSPCRSTSSKSSNNVFPDVRLSTYSAP 236
P P ++SS SN+ +PD LS+ SAP
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDTTLSSTSAP 96
>Z77663-11|CAB01211.3| 324|Caenorhabditis elegans Hypothetical
protein F53F4.12 protein.
Length = 324
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 320 HQHYHHREFHVKNLFYYDLRCETMGRLKMCDN 415
HQH+HH H +Y D+ E R + D+
Sbjct: 276 HQHHHHDSHHHSIDYYEDVEIEEEAREHVFDD 307
>AL032639-5|CAA21629.1| 342|Caenorhabditis elegans Hypothetical
protein Y38F1A.4 protein.
Length = 342
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 340 TVMIVLMALAYVSAHKEAVTLCGRNLANARVAVCYGAEYVDKRTSG 203
T +IV +AY+S + + N NA+ VC+ A+ + K G
Sbjct: 138 TFLIVAGPIAYISYNSRIYSFTIENKRNAKQFVCFLADSIIKGVCG 183
>Z79758-1|CAB61037.1| 340|Caenorhabditis elegans Hypothetical
protein W10D5.1 protein.
Length = 340
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 126 PLTGPATSAKESSTNAVSNHAPPTYS*NI 40
P++ PA S SSTN +SN S N+
Sbjct: 262 PVSQPAPSISNSSTNGISNGTSSLLSPNV 290
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 197 CVS-RCPFINVFCSITHCNPCVCKVPSTQSD 286
CVS C +V C T C P C P Q++
Sbjct: 621 CVSCTCRVGHVLCRTTECPPIACPNPEYQNE 651
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 197 CVS-RCPFINVFCSITHCNPCVCKVPSTQSD 286
CVS C +V C T C P C P Q++
Sbjct: 555 CVSCTCRVGHVLCRTTECPPIACPNPEYQNE 585
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 197 CVS-RCPFINVFCSITHCNPCVCKVPSTQSD 286
CVS C +V C T C P C P Q++
Sbjct: 555 CVSCTCRVGHVLCRTTECPPIACPNPEYQNE 585
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 197 CVS-RCPFINVFCSITHCNPCVCKVPSTQSD 286
CVS C +V C T C P C P Q++
Sbjct: 621 CVSCTCRVGHVLCRTTECPPIACPNPEYQNE 651
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 197 CVS-RCPFINVFCSITHCNPCVCKVPSTQSD 286
CVS C +V C T C P C P Q++
Sbjct: 555 CVSCTCRVGHVLCRTTECPPIACPNPEYQNE 585
>U36199-1|AAA79337.1| 340|Caenorhabditis elegans CeMEF-2 protein.
Length = 340
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 126 PLTGPATSAKESSTNAVSNHAPPTYS*NI 40
P++ PA S SSTN +SN S N+
Sbjct: 262 PVSQPAPSISNSSTNGISNGTSSLLSPNV 290
>U36198-1|AAA79336.1| 340|Caenorhabditis elegans CeMef-2 protein.
Length = 340
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 126 PLTGPATSAKESSTNAVSNHAPPTYS*NI 40
P++ PA S SSTN +SN S N+
Sbjct: 262 PVSQPAPSISNSSTNGISNGTSSLLSPNV 290
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 197 CVS-RCPFINVFCSITHCNPCVCKVPSTQSD 286
CVS C +V C T C P C P Q++
Sbjct: 555 CVSCTCRVGHVLCRTTECPPIACPNPEYQNE 585
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 197 CVS-RCPFINVFCSITHCNPCVCKVPSTQSD 286
CVS C +V C T C P C P Q++
Sbjct: 555 CVSCTCRVGHVLCRTTECPPIACPNPEYQNE 585
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 197 CVS-RCPFINVFCSITHCNPCVCKVPSTQSD 286
CVS C +V C T C P C P Q++
Sbjct: 555 CVSCTCRVGHVLCRTTECPPIACPNPEYQNE 585
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,835,427
Number of Sequences: 27780
Number of extensions: 197175
Number of successful extensions: 721
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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