Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B13
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23523-4|AAC46557.1|   83|Caenorhabditis elegans Hypothetical pr...    33   0.13 
AL110485-18|CAB60366.1|  108|Caenorhabditis elegans Hypothetical...    30   1.2  
Z68118-5|CAA92185.1|  245|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.3  
U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    27   8.4  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    27   8.4  

>U23523-4|AAC46557.1|   83|Caenorhabditis elegans Hypothetical
           protein F53A9.2 protein.
          Length = 83

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = +3

Query: 297 HQARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHG 440
           H    G  +H  HHH  S     GH   G     H   +G H    HG
Sbjct: 34  HVHTDGGHHHGHHHHHHSFLHELGHALTGHHHHHHGHHFGHHHHHHHG 81


>AL110485-18|CAB60366.1|  108|Caenorhabditis elegans Hypothetical
           protein Y46G5A.23 protein.
          Length = 108

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +3

Query: 330 RHHHRGSRAGSCGHRCGG 383
           R HHRG R G  GHR GG
Sbjct: 73  RRHHRGHRHGGGGHRHGG 90


>Z68118-5|CAA92185.1|  245|Caenorhabditis elegans Hypothetical
           protein R01E6.5 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 252 NHDGHQRCSLLYVRNHQARRGSSYHVRHHHRGSRAGSCGHRCGGQ 386
           +H  H+  S  Y    +++ G ++H +  H G  A   G+   G+
Sbjct: 6   SHSSHENASGKYGYGDESQHGKNFHQKAEHSGHEAKEKGYSQDGK 50


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/49 (28%), Positives = 18/49 (36%)
 Frame = +3

Query: 294 NHQARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHG 440
           +H +     +H  HHH  +  G  GH         H    G H   GHG
Sbjct: 554 SHHSPAHHGHHGEHHHAPAHHGHHGH------HGSHGVHHGHHESHGHG 596



 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 447 GYAHG-HDTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVHGSYS 313
           G  HG H + AH  +  A+     H G H   H+ ++    HG +S
Sbjct: 674 GTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHS 719


>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 447 GYAHGHDTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVH 325
           G++HGHD + H  + +++   D +  DH   H   +    H
Sbjct: 371 GHSHGHDDHGHDSHGHSH---DHNEHDHGHSHGGNNDNHGH 408


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 447 GYAHGHDTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVH 325
           G++HGHD + H  + +++   D +  DH   H   +    H
Sbjct: 389 GHSHGHDDHGHDSHGHSH---DHNEHDHGHSHGGNNDNHGH 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,579,430
Number of Sequences: 27780
Number of extensions: 173923
Number of successful extensions: 507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)