Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B13
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.4  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 372 RCGGQPRSKHSRIWGEHRCRGHGRSQEK 455
           R G  P+ + +RI    +   H RSQEK
Sbjct: 139 RFGRVPKREKARILAAMQQSSHSRSQEK 166


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 324 GSYSLVEPDGSVRKVDYTADDHHGF 250
           GS S   PDG    + Y AD+ +GF
Sbjct: 73  GSDSYTAPDGQQVSITYVADE-NGF 96


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 16  HHYLHINHTFISHPSRSSQTSI 81
           HH LHIN +  S  S   Q S+
Sbjct: 810 HHGLHINSSPSSVQSGQQQQSV 831


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 40 TFISHPSRSSQTSID 84
          TF+ HPSR +Q  ++
Sbjct: 13 TFLLHPSRCTQGKVN 27


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 40 TFISHPSRSSQTSID 84
          TF+ HPSR +Q  ++
Sbjct: 13 TFLLHPSRCTQGKVN 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,307
Number of Sequences: 438
Number of extensions: 2698
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)