Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B11
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    28   1.5  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    28   1.5  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   2.0  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    25   8.1  

>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 411 FRKFAAFNCVRVSASVAFVLASFCLRVIFSSYKERGDKAIA 533
           F +FA+ NCV  S    F  A   L VI     E+ +KA+A
Sbjct: 133 FLRFASHNCVHPSDDAPFNSAVEKLLVIVYEGTEKSEKAVA 173


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
 Frame = -2

Query: 592 PTSPDQGIDSDRLSSLEQ-NDAIALSPRSLYEENITLKQKLARTKATLAETLTQLNAAN- 419
           PT P   + +D + SL++ +D++ +    L  +    +QK+A T+    +T  +  A N 
Sbjct: 10  PTQPTASL-TDAIDSLDKRSDSVEVKIAKLDAQLSVFQQKIANTRPGPGQTALKQRAMNV 68

Query: 418 LRKRSVQRAICREIHKTQGVLRKARDQFETHSN 320
           LR++ +  +  +++ +    + +A    E+  N
Sbjct: 69  LRQKKIYESQLQQLQQQSFNMEQAAMTTESLKN 101


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 28   LLKINLAPAWRIKSQILVQNKEFILYTLIKVIYD 129
            ++K NL P W  ++ I+VQN+  +L  L  V YD
Sbjct: 1116 VIKKNLNPVWNEEADIVVQNR--VLDVLELVCYD 1147


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 28  LLKINLAPAWRIKSQILVQNKEFILYTLI 114
           LL +N+A  W+ K  +L +  EFI  TL+
Sbjct: 79  LLLVNIAKYWKGKPPLLKRRMEFIWITLL 107


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 89  LFCTNICDLIRQAGAKFIFNRIQQXTK 9
           LFC  +   I + G KFIF  +++ +K
Sbjct: 148 LFCQFMAKEIEKRGVKFIFGSVKEVSK 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,234
Number of Sequences: 5004
Number of extensions: 42920
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)