Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_B11
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 36 0.029
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 36 0.029
X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic int... 31 0.81
U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate fi... 31 0.81
U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate fi... 31 0.81
AF016420-2|AAB65306.1| 291|Caenorhabditis elegans Serpentine re... 31 0.81
AF016449-1|AAG23996.2| 122|Caenorhabditis elegans Hypothetical ... 30 1.4
Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z83114-9|CAB05553.2| 941|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z83114-8|CAJ76944.1| 875|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL021483-8|CAI79173.1| 941|Caenorhabditis elegans Hypothetical ... 29 3.3
Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical pr... 28 5.7
X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein. 28 5.7
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z69787-10|CAH65466.1| 398|Caenorhabditis elegans Hypothetical p... 28 7.6
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 35.9 bits (79), Expect = 0.029
Identities = 23/91 (25%), Positives = 46/91 (50%)
Frame = -2
Query: 598 DRPTSPDQGIDSDRLSSLEQNDAIALSPRSLYEENITLKQKLARTKATLAETLTQLNAAN 419
+RP SP + + R S + + + + SPR E+ + +K +R+++ AE L + + +
Sbjct: 180 ERPRSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVARKPSRSRSRSAERLRRKSRSP 239
Query: 418 LRKRSVQRAICREIHKTQGVLRKARDQFETH 326
R R R + R ++ +R QF++H
Sbjct: 240 RRSREEPRKMSRSRSRSADKASSSR-QFDSH 269
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 35.9 bits (79), Expect = 0.029
Identities = 23/91 (25%), Positives = 46/91 (50%)
Frame = -2
Query: 598 DRPTSPDQGIDSDRLSSLEQNDAIALSPRSLYEENITLKQKLARTKATLAETLTQLNAAN 419
+RP SP + + R S + + + + SPR E+ + +K +R+++ AE L + + +
Sbjct: 180 ERPRSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVARKPSRSRSRSAERLRRKSRSP 239
Query: 418 LRKRSVQRAICREIHKTQGVLRKARDQFETH 326
R R R + R ++ +R QF++H
Sbjct: 240 RRSREEPRKMSRSRSRSADKASSSR-QFDSH 269
>X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic
intermediate filamentprotein protein.
Length = 543
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -2
Query: 514 RSLYEENITLKQKLARTKATLAETLTQLNAANLRKRSVQRAICREIHKTQGVLRKARDQF 335
R + E TL+ KL+ +A + + N ++ QRA E+HK LR R+
Sbjct: 294 RKMNESITTLRAKLSELEARNSALEREANTLQIQLGEDQRAYESELHKRDNALRFMREDC 353
Query: 334 ET 329
+T
Sbjct: 354 QT 355
>U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate
filament, b protein2, isoform c protein.
Length = 526
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -2
Query: 514 RSLYEENITLKQKLARTKATLAETLTQLNAANLRKRSVQRAICREIHKTQGVLRKARDQF 335
R + E TL+ KL+ +A + + N ++ QRA E+HK LR R+
Sbjct: 294 RKMNESITTLRAKLSELEARNSALEREANTLQIQLGEDQRAYESELHKRDNALRFMREDC 353
Query: 334 ET 329
+T
Sbjct: 354 QT 355
>U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate
filament, b protein2, isoform a protein.
Length = 543
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -2
Query: 514 RSLYEENITLKQKLARTKATLAETLTQLNAANLRKRSVQRAICREIHKTQGVLRKARDQF 335
R + E TL+ KL+ +A + + N ++ QRA E+HK LR R+
Sbjct: 294 RKMNESITTLRAKLSELEARNSALEREANTLQIQLGEDQRAYESELHKRDNALRFMREDC 353
Query: 334 ET 329
+T
Sbjct: 354 QT 355
>AF016420-2|AAB65306.1| 291|Caenorhabditis elegans Serpentine
receptor, class sx protein12 protein.
Length = 291
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -3
Query: 390 FVERYTKLKVFYGRLEISSKLIVICNDYFSLS*YGNFAINNMLFIIKLWKTLILKVTLVC 211
FV Y+ + YG L + +I CN F+ + + + + I+ L TLI+ + ++
Sbjct: 128 FVFLYSSTVILYGYLTTNDDIIHACNPLFAFALTSRYTFKSSMLILSL-LTLIIYIVMIR 186
Query: 210 SF 205
F
Sbjct: 187 IF 188
>AF016449-1|AAG23996.2| 122|Caenorhabditis elegans Hypothetical
protein C50H11.8 protein.
Length = 122
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 233 IRVFHNFMMNSMLLIAKLPYYDK--LK*SLHITMSFELISSLP*NTLSFVYLSTNCA 397
+R F F+ SML + + P Y + +LH ++S SS+ ++L F++ CA
Sbjct: 6 LRAFQEFLSLSMLRMGRSPVYKARVKRWNLHFSLSRTFSSSMSFSSLLFLFAFIGCA 62
>Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical
protein T28C6.7 protein.
Length = 459
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = -2
Query: 568 DSDRLSSLEQNDAIALSPRSLYEENITLKQKLARTKATLAETLTQLNAANLRKRSVQRAI 389
+ DRL E+ D + S E+N L+ ++A K + + T+L+A+ + KRS+ +
Sbjct: 280 ERDRLQ--EEVDTLRSSRNWEIEQNALLRDQVAHLKEKVHKLTTELDASEVAKRSLSSEV 337
>Z83114-9|CAB05553.2| 941|Caenorhabditis elegans Hypothetical
protein K09B11.9a protein.
Length = 941
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 499 ENITLKQKLARTKATLAETLTQLNAANLR 413
EN LK +LA+T+A LAE ++ NL+
Sbjct: 853 ENANLKDRLAKTEAALAEANYKIEQLNLK 881
>Z83114-8|CAJ76944.1| 875|Caenorhabditis elegans Hypothetical
protein K09B11.9b protein.
Length = 875
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 499 ENITLKQKLARTKATLAETLTQLNAANLR 413
EN LK +LA+T+A LAE ++ NL+
Sbjct: 787 ENANLKDRLAKTEAALAEANYKIEQLNLK 815
>AL021483-8|CAI79173.1| 941|Caenorhabditis elegans Hypothetical
protein K09B11.9a protein.
Length = 941
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 499 ENITLKQKLARTKATLAETLTQLNAANLR 413
EN LK +LA+T+A LAE ++ NL+
Sbjct: 853 ENANLKDRLAKTEAALAEANYKIEQLNLK 881
>Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical
protein DY3.2 protein.
Length = 566
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/66 (21%), Positives = 33/66 (50%)
Frame = -2
Query: 541 QNDAIALSPRSLYEENITLKQKLARTKATLAETLTQLNAANLRKRSVQRAICREIHKTQG 362
+ND + + L ++NITL+ + K + + AAN + ++++ + + + +G
Sbjct: 168 RNDKLVVENDDLKKQNITLRDTVEGLKKAVEDETLLRTAANNKIKALEEDLAFALQQHKG 227
Query: 361 VLRKAR 344
L + R
Sbjct: 228 ELEEVR 233
>X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein.
Length = 566
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/66 (21%), Positives = 33/66 (50%)
Frame = -2
Query: 541 QNDAIALSPRSLYEENITLKQKLARTKATLAETLTQLNAANLRKRSVQRAICREIHKTQG 362
+ND + + L ++NITL+ + K + + AAN + ++++ + + + +G
Sbjct: 168 RNDKLVVENDDLKKQNITLRDTVEGLKKAVEDETLLRTAANNKIKALEEDLAFALQQHKG 227
Query: 361 VLRKAR 344
L + R
Sbjct: 228 ELEEVR 233
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +3
Query: 414 RKFAAFNCVRVSASVAFVLASFCLRVIFSSYKERGDKAIASFCSRLDNLSLSIP*SG 584
RK N VSA VAF L +FC F +Y K SF + D + SG
Sbjct: 139 RKVETTNQGNVSAKVAFSLRTFCDDTDFENYPNDVYKCCFSFEPQQDREVIQFTSSG 195
>Z69787-10|CAH65466.1| 398|Caenorhabditis elegans Hypothetical
protein C44C10.11 protein.
Length = 398
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 517 PRSLYEENITLKQKLARTKATLAETLTQLNAANLRKRSVQR 395
PR+ YE N ++++ TK L+ET QL + QR
Sbjct: 139 PRNEYESNSNNQEEIDATKKELSETKKQLETERQKSIESQR 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,029,373
Number of Sequences: 27780
Number of extensions: 228681
Number of successful extensions: 492
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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