Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B10
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    27   1.6  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    26   5.0  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   8.7  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    25   8.7  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   8.7  

>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 352 DCFAA*PGWTTIHILVEPIILKTNQSTNRRIPFIVVCNRFNKRAVNFATLANDQMSS 522
           +CF    GW +    V+     + +S+   I  + VCN F +  +N    A +Q SS
Sbjct: 189 ECFTNLLGWNSESASVKRTTSFSKKSSANMIRHLTVCNDFLQLGLNPKLQAKNQQSS 245


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
 Frame = -1

Query: 408 YWLY-------QDVYSRPAWLRCKAVLHSSVKAIEMSTMFQRLARD 292
           YWLY        D Y  P  + CK V + + +   M+  F  LAR+
Sbjct: 66  YWLYLKKLRPINDTYDAPFAIGCKNVAYEASQYPRMNATFMVLARN 111


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 564 SKFSGDYCMCLYYVRRHLVIRQRSKINSTFIKSVTYN 454
           +KF  D C  L    + + I++  KI S  +K   YN
Sbjct: 287 NKFHCDVCKSLQEAEKRMKIKKLPKILSLHLKRFKYN 323


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 564 SKFSGDYCMCLYYVRRHLVIRQRSKINSTFIKSVTYNNKRY 442
           S+  G   + + YV  H V      I +TF K++ Y  + +
Sbjct: 14  SRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEF 54


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = -3

Query: 592 SHASCVNLFQQVQW*LLYVSILCETTSG---HSPT*QN*QHVY*ICYIQQ*TVSFDXXXX 422
           SH S  NLF   +  L Y+   C++TSG     P  +  Q+    C +   ++++D    
Sbjct: 275 SHKSLPNLFYNPEKLLGYILQCCQSTSGGLRDKPPKRPDQYHTCYCLLGLSSIAYDYRYH 334

Query: 421 XXXXXXXLPGCV*SSSLATLQSSPAF 344
                   P  + SS  + L + P +
Sbjct: 335 TSDGWSYKPSILHSSLSSLLPAHPIY 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,870
Number of Sequences: 5004
Number of extensions: 46958
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)