Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B08
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    26   4.3  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    26   5.7  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    25   7.6  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   7.6  
SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|ch...    25   10.0 
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   10.0 
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   10.0 

>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
 Frame = -2

Query: 367 YKSVSAFAPICNPSACPWGVKAFSGYL-GEDKSKWAEWDATELVKKYNGPPLTLLLDQGS 191
           YK      P   P+   W   A+   L G  ++K   W  T+    YN   +  +L+  +
Sbjct: 59  YKEKKTTVPSIEPNEAVWKYGAWLVDLPGHPRAK--RWITTKFSGNYNVKAVVFVLNSAT 116

Query: 190 GDKFYLEKQXLPENLVEACRSVGVPVILQLRDGYD 86
            D+   E   +  + +  CR   VP +L   + +D
Sbjct: 117 IDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFD 151


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 664 RYAAXHGVIVVGPDTSPRGVKIDGDDSSWDFGVS 563
           RY    G IV+   ++PR +K +GD   +DF +S
Sbjct: 219 RYCLQRGFIVLPKSSTPRRIKENGD--VFDFEIS 250


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 640 IVVGPDTSPRGVKIDGDDSSWDFGVSA 560
           +++    S R + I G+D+ W  G+SA
Sbjct: 115 VILATGASARRLHITGEDTYWQAGISA 141


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 465 AFKIKSYNSTFK*L-PIL*LLFHGSFVASK*KPALTPKSHDESSP 596
           A + K+Y +  K L PIL  LF+GS+ +SK K  LT +      P
Sbjct: 98  ASRNKNYGTEKKPLNPILGELFYGSWDSSKGKVELTAEQVSHHGP 142


>SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 149

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 310 VKAFSGYLGEDKSKWAEWDATELVKKYNGPPLTLLLD 200
           VK     LG DK K   + A   V+  N  P+T+L D
Sbjct: 110 VKTLGESLGSDKIKKGVFGAMMNVQLVNNGPVTILYD 146


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 361 TCTDQDSSE*KLKHHALPCCVP*YQFYXDLPHCKKPSKLNHIIQHSNNCP 510
           TC   D     L +H++P   P +    ++   K+ +  ++I +H+NN P
Sbjct: 6   TCPSSDCGI--LCNHSVPSFPPFHSSVANIHFTKENNLKSNIFEHNNNSP 53


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 220 PLTLLLDQGSGDKFYLEKQXLPENLVEACRSVG 122
           PLTL +DQGSG +  L +Q    + + A +S G
Sbjct: 369 PLTLEIDQGSGSQL-LGQQSFANDSLNAKQSSG 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,428
Number of Sequences: 5004
Number of extensions: 58744
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)