Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B07
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    80   2e-16
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    29   0.58 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   2.3  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.3  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   4.1  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    25   5.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.4  

>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
 Frame = -3

Query: 295 NLSGFNKYGLLRDDC-LHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEW 119
           +LSG+ KYGL  DD  L E  D  +AL RLP     +R +RI RA+QLS++  ILPK EW
Sbjct: 29  HLSGYRKYGLRYDDLMLEENDDTQKALSRLPKMESYDRVYRIRRAMQLSIENKILPKSEW 88

Query: 118 TKYEEDSRD*TPIVEQVEKERLEREQWE 35
           TK EED     P++ +V  ER ERE ++
Sbjct: 89  TKPEEDYHYLRPVLAEVIAERKEREAFD 116


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 130 KEEWTKYEEDSRD*TPIVEQVEKERLEREQWEKED 26
           +E+ T YEED  D      QV++E LE E+ E+ED
Sbjct: 58  EEDDTNYEEDIID-DEESAQVDEEELEEEEEEEED 91


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 350 HHGSCSKSHFIDSQIYDFNVILT 418
           HHGS SK H I  Q+  ++++LT
Sbjct: 474 HHGS-SKKHKIAEQLMSYDIVLT 495


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 290 KIVGPFAEAVTSVNSRGSESHHGSCSKSH-FIDSQIYDFNVILTQTTRNS 436
           K + P ++ +T  N + + SH GS +KSH F    ++D N  ++    N+
Sbjct: 320 KELSPHSQ-ITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKPVSSDNHNN 368


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 190 RQQHGMEVCGVLQLHQEFHASNHPV 264
           + +HG  VC    L+   H  N P+
Sbjct: 432 KDRHGQTVCNACGLYARLHGHNRPI 456


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 138 SYLKKSGQNMKKIPETEPQLLSKLRKRGWRE 46
           ++L++   ++  I E  P +L  +RK GW +
Sbjct: 201 TFLQEKEPSLHVIIEPHPDVLKHMRKNGWMD 231


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 307 KWAYNLSGFNKYGLLRDD 254
           KW + +  F++YGLL D+
Sbjct: 926 KWIFKVQHFSRYGLLDDE 943


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,604
Number of Sequences: 5004
Number of extensions: 42581
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)