Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B07
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-9|AAF39958.1|  130|Caenorhabditis elegans Hypothetical ...    66   1e-11
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    31   0.39 
AF078157-8|AAG24076.1|  409|Caenorhabditis elegans Hypothetical ...    29   2.1  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    29   2.8  
AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    29   2.8  
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t prot...    28   3.7  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    28   3.7  
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    28   3.7  
Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode ast...    28   4.8  
Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AC024791-3|AAF60673.1|  468|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z70306-1|CAA94322.1|  355|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AC006684-9|AAF39958.1|  130|Caenorhabditis elegans Hypothetical
           protein T02H6.11 protein.
          Length = 130

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
 Frame = -3

Query: 322 SDSLSKWAY-NLSGFNKYGLLRDDCLHE-TPDVTEALRRL---PSHVVDERNFRIVRAIQ 158
           + +L K+A+ NL G  +YGL   D   E  P+VTEALRRL     HV D+R  R+ RA  
Sbjct: 19  ASTLRKFAWSNLWGGREYGLQFHDTYFEPAPEVTEALRRLNLQEPHVFDQRKIRLSRAHT 78

Query: 157 LSMQKTILPKEEWTKYEEDSRD*TPIVEQVEKERLEREQ 41
           L++    LPK EWT+++++S    P ++++E E+  R +
Sbjct: 79  LALHGEKLPKAEWTQWDQESWYLKPYLDEIEAEKKARAE 117


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical protein
            F11C1.5a protein.
          Length = 1804

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
 Frame = -3

Query: 310  SKWAYNLSGFNKYGL------LRDDCLHETPDVTE-ALRRLPSHVVDERN-------FRI 173
            ++W     G+N  GL       R D  H+   + + A +++P H++ +          + 
Sbjct: 1466 NQWMGGTGGYNTAGLGGIGGPFRLDAGHDVHQMPDFAKQQVPKHILKKAREIAKVEYAKK 1525

Query: 172  VRAIQLSMQKTILPKEEWTKYEEDSRD*TPIVEQVEKERLEREQWEK 32
            +R I +S       ++ W K +  SR    +++Q+E ++ ERE W K
Sbjct: 1526 LREINMSEYDADAYEKVWNKVQAPSRKLASVIDQLEAKKKERE-WTK 1571


>AF078157-8|AAG24076.1|  409|Caenorhabditis elegans Hypothetical
           protein F25E5.5 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/67 (23%), Positives = 26/67 (38%)
 Frame = -3

Query: 292 LSGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTK 113
           + GF K+ +L DDC  E     +   R    +  + ++ IV    L +    +   E   
Sbjct: 46  IGGFEKWPVLTDDCKIEVVKYLDLWSRCKLSICSKSDYEIVNKTALKLDCIDIQDNETWH 105

Query: 112 YEEDSRD 92
           YE    D
Sbjct: 106 YELSKED 112


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 157 LSMQKTILPKEEWTKYEED--SRD*TPIVEQVEKERLEREQWEKE 29
           LS+ K +L K++  + E++   ++      Q EKERLERE  EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260


>AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical
           protein F19B2.8 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 210 FHPMLLTRETSVLYVPYSSPCKKQSYLKKSGQN 112
           FH +LL   TS+LY+P     +K SYL  S +N
Sbjct: 199 FHSILLIA-TSLLYIPIMRHVRKFSYLPSSQKN 230


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 157 LSMQKTILPKEEWTKYEED--SRD*TPIVEQVEKERLEREQWEKE 29
           LS+ K +L K++  + E++   ++      Q EKERLERE  EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 235 DVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 122
           D ++ LR+  SH++ ER+F +  AIQL+    +  +E+
Sbjct: 319 DTSQNLRKNVSHLIQERHFEL--AIQLAENSNLFAEEQ 354


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 235 DVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 122
           D ++ LR+  SH++ ER+F +  AIQL+    +  +E+
Sbjct: 319 DTSQNLRKNVSHLIQERHFEL--AIQLAENSNLFAEEQ 354


>U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t protein
           3, isoform c protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 118 TKYEEDSRD*TPIVEQVEKERLEREQWEKE 29
           T+ E++  +   + E+ EK +LEREQ EKE
Sbjct: 81  TEREKEEEELKKLKEKQEKRKLEREQEEKE 110


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
            3, isoform b protein.
          Length = 1178

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 118  TKYEEDSRD*TPIVEQVEKERLEREQWEKE 29
            T+ E++  +   + E+ EK +LEREQ EKE
Sbjct: 915  TEREKEEEELKKLKEKQEKRKLEREQEEKE 944


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 118 TKYEEDSRD*TPIVEQVEKERLEREQWEKE 29
           T+ E++  +   + E+ EK +LEREQ EKE
Sbjct: 81  TEREKEEEELKKLKEKQEKRKLEREQEEKE 110


>Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical
           protein ZK632.2 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 199 VVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSRD*TPIVEQVEKERLEREQWEKE 29
           ++D  N       +L MQ+  L   ++  Y+ED         Q+EK+R +R+QW +E
Sbjct: 347 ILDTYNVLRKSNTKLRMQRKTLEANDY--YDEDDDLYLDRTGQLEKQREKRKQWAEE 401


>AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode
           astacin protease protein32 protein.
          Length = 651

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 153 PCKKQSYLKKSGQNMKKIPETEPQLLSKLRK 61
           P K++  LKK G+ M KIP+   +  +KL K
Sbjct: 116 PEKRKKQLKKMGKKMMKIPKITKKESNKLHK 146


>Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical
           protein Y37A1A.2 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 126 SLGRIVFCMESCMARTIRKFLSSTTW 203
           SL RI  C+ SC+   I  +L+ TTW
Sbjct: 403 SLTRIYQCVASCVILFISPYLTVTTW 428


>AC024791-3|AAF60673.1|  468|Caenorhabditis elegans Hypothetical
           protein Y47G6A.13 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -3

Query: 265 LRDDCLHETPDVTEALRRLP--SHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSRD 92
           L +D   E   + E LR L        E+ + ++ A    ++   L   EW   E+D  +
Sbjct: 256 LFEDLPDELKSIFEYLRTLSYADRPNYEKIYNLLMAAITRLKINFLDPYEW---EDDEME 312

Query: 91  *TPIVEQVEKERLEREQWEKED 26
                E+ EKE+ E+E+ EKE+
Sbjct: 313 RMAKAEKEEKEKEEKEKKEKEN 334


>Z70306-1|CAA94322.1|  355|Caenorhabditis elegans Hypothetical
           protein C06G8.1 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = +1

Query: 85  GFSLGNLLHILSTLL*VGLFF 147
           GFSL NLL IL+    VGLFF
Sbjct: 8   GFSLLNLLSILAFFTTVGLFF 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,577,894
Number of Sequences: 27780
Number of extensions: 230771
Number of successful extensions: 964
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)