Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B05
         (661 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    28   0.30 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   0.92 
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   4.9  

>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 315  YKFVHYYDCILYFYNHKFRQDYIIKNINKGKQYLIYSQFDNRRQEQ 452
            YK   YY      Y H F+  +   N N   Q   Y QF N+ QE+
Sbjct: 964  YKSSDYYYKYYKQYPHLFKDYFSQYNKNHKYQNDYYEQFGNKNQEE 1009


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.2 bits (55), Expect = 0.92
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 284 TAGPLVTLKSYYKLISENQPYNVD 213
           T GPL  LK Y +L+ E  P+  D
Sbjct: 314 TVGPLSYLKQYLELLDEFGPWGAD 337


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 221 NVDLNLYLLRYYISVSFQISNI 156
           N+D+ + L  YYISV + I  +
Sbjct: 189 NIDIGIDLQDYYISVEWDIMKV 210


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,409
Number of Sequences: 2352
Number of extensions: 10817
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)