Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B04
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    27   0.19 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.77 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.4  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 724 GPEGTGPNIXVDCSKGVQYLNEIKDSVVA 638
           GP   GP+  +D + GV Y  +I  + +A
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQINRNGIA 322


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 656 NFIEVLNSFGAIHXDVGAGTLGAKXPNLTGFGNIV 760
           +F   +   G  H  V AG +GA+ P+   +GN V
Sbjct: 888 SFNHFVLKMGINHGPVTAGVIGARKPHYDIWGNTV 922


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 676 VQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDV 560
           ++  N  K +++ GF   A + +  E N +GV    Y+V
Sbjct: 524 IELANTFK-AIIYGFNVNATKQIKDEANKKGVSLRFYNV 561


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 558  HSILMPSIEVVAKSFQQLEDACTHVC*LLSPV 463
            HS+L  +  VVA S   + +  T++  +L PV
Sbjct: 939  HSVLHSAQSVVASSASNVTNVTTNLTTILPPV 970


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 196 SKPYNVVQETRKRKGLKEGLP 134
           S+PY   +     KG KEG+P
Sbjct: 593 SQPYGFPERLLLPKGKKEGMP 613


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 196 SKPYNVVQETRKRKGLKEGLP 134
           S+PY   +     KG KEG+P
Sbjct: 593 SQPYGFPERLLLPKGKKEGMP 613


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 418 AVGGIYGVLNRRR 380
           A GGIY + N+RR
Sbjct: 317 AEGGIYDISNKRR 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,544
Number of Sequences: 438
Number of extensions: 5099
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)