Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B02
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    28   4.6  
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     28   6.1  
AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 194 FYCLYHLKY*LIIFVDYFRFTKRLCF 117
           FYC+Y ++  +++ ++ +  T  LCF
Sbjct: 55  FYCIYFIQLRVMMIMEIYNITNNLCF 80


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 563 GNLN----EFGRPMNRFFFKSSRAGVLDHQSTLKTAQNVRETVH 444
           GN+N      G PM R F+K +   VLD  ST    +NV    H
Sbjct: 266 GNINLTCVAVGYPMPRVFWKKTDLMVLDDPSTAPIGKNVLTLTH 309


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 563 GNLN----EFGRPMNRFFFKSSRAGVLDHQSTLKTAQNVRETVH 444
           GN+N      G PM R F+K +   VLD  ST    +NV    H
Sbjct: 266 GNINLTCVAVGYPMPRVFWKKTDLMVLDDPSTAPIGKNVLTLTH 309


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 563 GNLN----EFGRPMNRFFFKSSRAGVLDHQSTLKTAQNVRETVH 444
           GN+N      G PM R F+K +   VLD  ST    +NV    H
Sbjct: 266 GNINLTCVAVGYPMPRVFWKKTDLMVLDDPSTAPIGKNVLTLTH 309


>AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical
           protein Y94A7B.7 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 213 ILKNIMILLFISFEILINNFRGLLSIYKTPLFL-SVFFSHVNYHF 82
           +  NI+ +   +F + I+ F G   +YKTP+ + SV +S  N HF
Sbjct: 11  VYSNILYITS-AFSLPIHIFGGYCILYKTPVIMKSVKWSLFNLHF 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,520,784
Number of Sequences: 27780
Number of extensions: 216210
Number of successful extensions: 586
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)