Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_B01
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7MY71 Cluster: Wzy protein; n=1; Photorhabdus luminesc...    33   5.9  
UniRef50_Q22M46 Cluster: Putative uncharacterized protein; n=2; ...    33   5.9  

>UniRef50_Q7MY71 Cluster: Wzy protein; n=1; Photorhabdus luminescens
           subsp. laumondii|Rep: Wzy protein - Photorhabdus
           luminescens subsp. laumondii
          Length = 342

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +2

Query: 104 FVMLFDYIVSVSILFKVTY*RTSSXFLYYKFLLIISKNIPLN 229
           F +LF ++ +  +L   TY R ++ FL++ FL+ +S   PLN
Sbjct: 21  FFILFIFVYTFLLLVINTYNRIAASFLFFCFLIFLSIYFPLN 62


>UniRef50_Q22M46 Cluster: Putative uncharacterized protein; n=2;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 4844

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
 Frame = +3

Query: 240  LKRNEKSELNNNLKPYNTLTSSFKNIFRFVQCRNLI--I*FLSIDNPF*KCDQEYNIPNI 413
            L +N+KSEL N++   ++  ++  NIF+  Q + L+  I F+++  P      E+  P  
Sbjct: 1436 LLKNQKSELKNSI---SSFVNALINIFQKKQGKQLLKSIGFVNLKGPVFDFVWEFAFP-- 1490

Query: 414  KFNIKGFYLFVLPNLHCVHLIPMLIV-EHYSKIILSV 521
            + N KG Y   L N+ CV L  ++ V     K I+S+
Sbjct: 1491 QENFKGNYQDHLINVFCVALSNVISVWNKQLKSIISI 1527


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,790,854
Number of Sequences: 1657284
Number of extensions: 9388567
Number of successful extensions: 18242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18239
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)