Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A19
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   1.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.4  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 124 SVTPITMESGLSSLSFNVPLCNLATSALTAADRAVETTCSKSAPVHLSGSASAT-ASKFT 300
           ++   T     +SL  ++    +A +A+  A +    + + S+P H   SAS + A++ T
Sbjct: 26  TIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTT 85

Query: 301 SGLSLYFLQSAS 336
           S +  Y   +A+
Sbjct: 86  SSMYPYVSAAAA 97


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 702 CQRSRXTKYVHRSVRREC*K 643
           CQR R    VHR    +C K
Sbjct: 171 CQRERVASVVHRQETVDCLK 190


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 631 DSKTFLTFSSD*PMYIFSXSGPLTLXK 711
           D ++F  F  D P+Y F+  GP  L K
Sbjct: 643 DKRSF-GFPLDKPLYDFNYEGPNMLFK 668


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 631 DSKTFLTFSSD*PMYIFSXSGPLTLXK 711
           D ++F  F  D P+Y F+  GP  L K
Sbjct: 643 DKRSF-GFPLDKPLYDFNYEGPNMLFK 668


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,464
Number of Sequences: 438
Number of extensions: 3603
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)