Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_A15
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0440 - 9423874-9423999,9424199-9424393,9424885-9425091,942... 48 7e-06
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527... 37 0.013
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430... 32 0.38
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 1.1
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 30 1.5
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 30 1.5
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312... 30 1.5
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 29 4.6
07_01_0579 + 4299104-4299652,4300845-4300935,4301018-4301211,430... 28 6.1
03_06_0496 + 34328702-34329674,34329726-34330631,34330858-343310... 28 6.1
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 6.1
03_06_0775 - 36174098-36174204,36174540-36174594,36174690-361747... 28 8.1
>09_02_0440 -
9423874-9423999,9424199-9424393,9424885-9425091,
9425518-9425707,9425849-9425931
Length = 266
Score = 48.0 bits (109), Expect = 7e-06
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 7/226 (3%)
Frame = -3
Query: 692 IVATNRDEFYDRPXAELAPWKDNPNIIXXXXXXXXXXXGTWLAVSPLRKKMGVLLN-LPN 516
++ NRDEF+ RP + W + I TW+ + ++ L N L
Sbjct: 17 LLLLNRDEFHSRPTKAVGWWGEGSKKILGGRDVLGGG--TWMGCTK-DGRLAFLTNVLEP 73
Query: 515 TPKKNAKSRGKIVAEFVKSKKEAVSYVQEMKSYFEECNNFIFVAMDFGNTTPVINSFTNV 336
A++RG + F++S K + E+ +E N F V D V S
Sbjct: 74 DAMPGARTRGDLPLRFLQSNKSPLEVATEVAKEADEYNGFNLVLADLTTNVMVYVSNRPK 133
Query: 335 TNKITTH-TDPCLG-FGNSLPDMPLKK-VEAGLTKMYDICK-GLNKISMKSKLLEELTAL 168
T P L N+ D P +K + G + K G +++ K + +T
Sbjct: 134 GQPATIQLVSPGLHVLSNARLDSPWQKAIRLGKNFREHLRKHGDDEVEAKDIVERLMTDT 193
Query: 167 LKCNERHLPDAQLQERRPNLYEELSSIFVCVPEER--YGTRAQTIL 36
K ++ LP+ PN LSSIF+ V ++ YGTR+ +L
Sbjct: 194 TKADKDRLPNTGCD---PNWEHGLSSIFIEVQTDQGLYGTRSTAVL 236
>07_01_0698 -
5269329-5269579,5270673-5270928,5271158-5271725,
5271757-5272763
Length = 693
Score = 37.1 bits (82), Expect = 0.013
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = -3
Query: 479 VAEFVKSKKEAVSYVQEMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTNKITTHTDPCL 300
+A V + + S++Q K E+ N F F +D T +INS + + T
Sbjct: 22 IAAVVATIDKIYSHLQLDKGSLEKKNGFCFGLLD-PVTNILINSAISELSPATAAQAVVG 80
Query: 299 GFGNSLPDM---PLKKVEAGLTKMYDICKGLNKISMKSKLLEELTALLKCNERHLPDAQ 132
G G D+ +VEAG +G N + + L+ LTA L C +LPDA+
Sbjct: 81 GGGEKAKDLNNNAAPRVEAGGGSRKRRRRGDNAADLSQRSLDGLTAFLTCLFPYLPDAE 139
>03_05_0976 -
29341981-29342229,29342388-29342621,29342771-29343046,
29343181-29343457,29343549-29343847,29344021-29344152,
29344451-29344660,29344812-29344875,29346114-29346260,
29346477-29346760
Length = 723
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Frame = +1
Query: 163 FKSAVNSSKSLLFIEILLSPLQ-----ISYILVRPASTFFNGISGKLFPKPKQGSVCVVI 327
F S N K F++++ L +S V P FF+ I G + ++ S C I
Sbjct: 370 FPSLKNMLKKPFFVKLVTGYLPSVVLLLSLYTVPPLMMFFSSIEGSISRSGRKKSACCKI 429
Query: 328 LFVTFVKLFMTGVV 369
LF T +F V+
Sbjct: 430 LFFTIWNVFFVNVL 443
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 223 LQISYILVRPASTFFNGISGKLFPKPKQGSVCVVILFVTFVKLFMTGVVFPKSIATKMKL 402
LQI V P FF+ + G + ++ S C +L+ T +F V+ +I +++
Sbjct: 356 LQIFLYTVPPTMMFFSTLEGPVSHSERKRSACCKVLYFTIWNVFFVNVLSGSAI-SQVNA 414
Query: 403 LHSSK 417
L S K
Sbjct: 415 LSSPK 419
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 223 LQISYILVRPASTFFNGISGKLFPKPKQGSVCVVILFVTFVKLFMTGVVFPKSIATKMKL 402
LQI V P F+ + G + ++ S C +L+ T +F G V ++ +++ +
Sbjct: 362 LQIFLYAVAPIMILFSTLEGPISHSERKRSACCKVLYFTVWNIFF-GNVLSGTVISQLNV 420
Query: 403 LHSSK 417
L S K
Sbjct: 421 LSSPK 425
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 290 NSLPDMP-LKKVEAG-LTKMYDICKGLNKISMKSKLLEELTALLKCNERHLPDAQ-LQER 120
N D P LK V L + IC+ KI M + +LE + C+ RHLPD Q L E
Sbjct: 915 NDAIDFPKLKHVHLHELPSLKGICEA--KI-MSAPMLEAIMIRGCCSLRHLPDVQGLHEP 971
Query: 119 RPNLYEE 99
RP +Y E
Sbjct: 972 RPIVYCE 978
>02_01_0427 -
3124209-3124307,3124453-3125240,3125510-3125867,
3125902-3126567
Length = 636
Score = 30.3 bits (65), Expect = 1.5
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = +1
Query: 94 LNSSYKLGLRSCSWASGRCLSLHFKSAVNSSKSLLF--IEILLSPLQISYILVRPASTFF 267
L +S++LG CSW C S+ K A+ + L +E +SP + +
Sbjct: 42 LAASWRLGTDCCSWEGITCSSMVSKDAMVTDVLLASKRLEGSISPALGRLPGLLRLNLSH 101
Query: 268 NGISGKLFPKPKQGSVCVVILFVTFVKLFMTGVVFPKS--IATKMKL 402
N +SG L P S ++IL V+F L G + P S + T +KL
Sbjct: 102 NSLSGGL-PSEVMSSGSIIILDVSFNSL---GRILPLSPPLTTGLKL 144
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 28.7 bits (61), Expect = 4.6
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 290 NSLPDMP-LKKVEAG-LTKMYDICKGLNKISMKSKLLEELTALLKCNERHLPDAQ-LQER 120
N D P LK V L + IC+ KI M + +LE + C+ RHLPD + L E
Sbjct: 910 NDAIDFPKLKHVHLHELPSLKGICEA--KI-MSAPMLETILIRGCCSLRHLPDVKGLHEP 966
Query: 119 RPNLYEE 99
RP +Y E
Sbjct: 967 RPIVYCE 973
>07_01_0579 +
4299104-4299652,4300845-4300935,4301018-4301211,
4301501-4301622,4302378-4302856,4303033-4303334
Length = 578
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 356 INSFTNVTNKITTHTDPCLGFGNSLPDMPLKKVEAGLTKMYDICKGLNK-ISMKSKLLEE 180
I+S N+ I + G+ +PL++V + K+ +C+ LNK + + S+LLE
Sbjct: 330 IDSLKNLEEIIRASDGAMVARGDMGAQIPLEQVPSVQQKIVKLCRQLNKPVIVASQLLES 389
Query: 179 L 177
+
Sbjct: 390 M 390
>03_06_0496 +
34328702-34329674,34329726-34330631,34330858-34331062,
34331152-34331348,34331434-34331492
Length = 779
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = -3
Query: 227 CKGLNKISMKSKLLEELTALLKCNERHLPDAQLQERRPNLYE 102
C L +++++ +L + + C+ RH+ Q+ ++R NL+E
Sbjct: 637 CPNLTRLAVR--ILSQTCSAKGCDRRHISFEQIHDQRMNLFE 676
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 28.3 bits (60), Expect = 6.1
Identities = 26/96 (27%), Positives = 41/96 (42%)
Frame = -3
Query: 458 KKEAVSYVQEMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTNKITTHTDPCLGFGNSLP 279
K EAV+ E+ + EE N I + TN+ N++T H + C + L
Sbjct: 525 KNEAVASTLELGNKLEEKNQQISNLQEAVENLEAAK--TNMYNEVTVHQEKCTFLSSQLE 582
Query: 278 DMPLKKVEAGLTKMYDICKGLNKISMKSKLLEELTA 171
L + E T + +I K N+ M S+ + L A
Sbjct: 583 KAQLAEKEV-QTLLSEIEKMKNENLMLSRENDNLKA 617
>03_06_0775 -
36174098-36174204,36174540-36174594,36174690-36174741,
36174947-36175028,36175110-36175204,36175339-36175727
Length = 259
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 318 CCYFVCDIREAIYDWRGVSKVHCYKNEIITFFKIRFHFLNI*YSLFFTF 464
C +++C +EA R K+H ++ + K LNI +LF TF
Sbjct: 174 CSFYICSRKEAALVIR---KIHIFQESPVKPCKFSLEILNIATNLFDTF 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,942
Number of Sequences: 37544
Number of extensions: 335670
Number of successful extensions: 832
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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