Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A15
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.68 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 479 VAEFVKSKKEAVSYVQEMKSYFEECNNFIFVAM 381
           +A  V++    VSY++  + +F  C  F+F AM
Sbjct: 277 LASKVENSLPKVSYIKASEIWFLGCTIFLFAAM 309


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 467 VKSKKEAVSYVQEMKSYFEECNNFIFVAM 381
           V+S    +SYV+ +  Y   C  F+F A+
Sbjct: 291 VRSSLPRISYVKAIDIYLVMCFVFVFAAL 319


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 446 VSYVQEMKSYFEECNNFIFVAM 381
           VSY++ + ++   C  F+F+A+
Sbjct: 301 VSYLKAVDAFMSVCTVFVFMAL 322


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 446 VSYVQEMKSYFEECNNFIFVAM 381
           VSYV+ +  +   C+ F+F+++
Sbjct: 270 VSYVKAIDVWMSSCSVFVFLSL 291



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/43 (23%), Positives = 18/43 (41%)
 Frame = +3

Query: 414 KIRFHFLNI*YSLFFTFHKFCYNFTSAFCIFLWCIW*VQKYSH 542
           K+ FH ++I     + +H     + S   + L C    + Y H
Sbjct: 99  KVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPH 141


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 467 VKSKKEAVSYVQEMKSYFEECNNFIFVAM 381
           +KS    V+YV+ +  +   C  F+F A+
Sbjct: 249 LKSDIPPVAYVKALDVWMAGCMMFVFAAL 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,921
Number of Sequences: 438
Number of extensions: 4343
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)