Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A13
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    81   1e-16
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   9.1  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
 Frame = -2

Query: 461 PAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDF-----NNIEFDSYII 297
           PA  LI +A                 +T+K+IG Q +  YE +DF       + FDSY++
Sbjct: 85  PALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMV 144

Query: 296 PSNEIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPSLGVKVDANPGRLNQTN 117
           P  +++    R L+VD              +T+ DVIHS  +PSLG+K D  P RLNQ +
Sbjct: 145 PEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVS 204

Query: 116 FFINRPGIFF 87
             I+R G+F+
Sbjct: 205 LSIDREGLFY 214



 Score = 28.7 bits (61), Expect = 0.74
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -1

Query: 72  EICGANHSFIPIVIESISIKN 10
           E+CG  HS +PIV++ +S+++
Sbjct: 219 ELCGVLHSSMPIVVQGVSLED 239


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 256 SNSRNSLFFISLDGIIYESNSILLKSE 336
           + SRN+L+FI LD     SN   + SE
Sbjct: 175 TGSRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,576
Number of Sequences: 5004
Number of extensions: 27203
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)