Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A12
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    27   1.8  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   3.1  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.4  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   9.4  

>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 15  CYSKYFHYIRSFNNPRYYINQLPFSI 92
           C  +Y  +++S  N  YYI + PF I
Sbjct: 188 CVIRYLKHLKSVPNVSYYIYKFPFKI 213


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 18  YSKYFHYIRSFNNPRYYINQLPFSIRIVKRQSSCYQLHFLIPGL 149
           YSK FHY+   +N + +IN L     I   Q  C QL  L   L
Sbjct: 195 YSKLFHYLLHSSNLKAFINPL-----IPLTQKFCVQLQKLFADL 233


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 441 DHVRLANKKSLIQVMDFTHFYNLSIFFNLLIRSGQKEKTVHFHK 572
           D+ +L +  S  ++ +      + +  NL IRS QK++++  HK
Sbjct: 651 DNDKLGDPNSTYKINENFRMKKIRVQLNLPIRSEQKQESLETHK 694


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 462 KKSLIQVMDFTHFYNLSIFFNLLIRSGQKEK 554
           +K+   VM FT F  L I F L +RS +KEK
Sbjct: 233 RKAAGVVMAFTGFLVLVIPFGLGVRSRKKEK 263


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -1

Query: 368  LYFIML---FLNYKFCCMN*CE*VTRSKHLVTDACSLTFKYCLK 246
            L FI+L   F N KF   N CE  +     +TD     F+ CLK
Sbjct: 3254 LQFIILKPFFENSKFTKQNLCESASIIVQFITDLTVGEFQLCLK 3297


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 21  SKYFHYIRSFNNPRYYINQLPFSIRIVKRQSSCYQL 128
           S YF ++       YY  +L F I  +K ++   QL
Sbjct: 517 SDYFRFVLRVGKSLYYAGELSFDISKLKAETEHQQL 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,258
Number of Sequences: 5004
Number of extensions: 45678
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)