Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A12
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U40409-5|AAL27247.1|  589|Caenorhabditis elegans Activator of g ...    28   5.0  
U40409-4|AAA81387.1|  579|Caenorhabditis elegans Activator of g ...    28   5.0  
AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    28   5.0  
Z95622-1|CAB09132.2|  480|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z68131-3|CAA92219.2|  480|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF497823-1|AAM18101.1|  479|Caenorhabditis elegans putative Na-H...    27   8.7  

>Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical
           protein C44H9.6 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 284 TDACSLTFKYCLKNTQLNCE 225
           T  C  +  YC KN+ +NCE
Sbjct: 329 TSVCEHSLNYCQKNSNINCE 348


>U40409-5|AAL27247.1|  589|Caenorhabditis elegans Activator of g
           protein signallingprotein 3, isoform b protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 218 KCIRNSIVYFSNST*MSKSMHQLLGVLTL*PIHINSYNKTCNLKKAL*SIVVAK 379
           K ++ +I YF     +++S+  + G L        S+N  C  +KAL  +V+AK
Sbjct: 289 KEVQKAITYFQRHLKIARSLEDISGQLRSYYSLALSFNNLCERRKALYFLVLAK 342


>U40409-4|AAA81387.1|  579|Caenorhabditis elegans Activator of g
           protein signallingprotein 3, isoform a protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 218 KCIRNSIVYFSNST*MSKSMHQLLGVLTL*PIHINSYNKTCNLKKAL*SIVVAK 379
           K ++ +I YF     +++S+  + G L        S+N  C  +KAL  +V+AK
Sbjct: 279 KEVQKAITYFQRHLKIARSLEDISGQLRSYYSLALSFNNLCERRKALYFLVLAK 332


>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 444 HVRLANKKSLIQVMDFTHFYNLSIFFNLLIRSGQKEKTVHFHKITLF 584
           H     KK + Q    +HF     F  ++IR  ++ K + FHKI  F
Sbjct: 357 HKTKMTKKIMFQFPKISHFNFPKQFCRIIIRIKKQVKILSFHKIYCF 403


>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 22  LNISITFAVSTTLGTTLTNYLFRLG**NDNPLVTSYIF*SPAYIRLYIIFQREQREN 192
           +N SI +    T  T L++ + RL   ND P+V  Y      Y+R Y+  + +  EN
Sbjct: 172 VNFSIKYMNQFTKATALSDRV-RLSLCNDVPVVVEYPIEENGYLRFYLAPKIDDDEN 227


>Z95622-1|CAB09132.2|  480|Caenorhabditis elegans Hypothetical
           protein B0395.1 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 281 DACSLTFKYCLKNTQLNCECILSSYYNFILFSLCSLW 171
           +   +T KY LK     CE I+  +  F +FS    W
Sbjct: 251 ERADITVKYTLKTLSSCCEAIIFVFLGFSIFSKDHKW 287


>Z68131-3|CAA92219.2|  480|Caenorhabditis elegans Hypothetical
           protein B0395.1 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 281 DACSLTFKYCLKNTQLNCECILSSYYNFILFSLCSLW 171
           +   +T KY LK     CE I+  +  F +FS    W
Sbjct: 251 ERADITVKYTLKTLSSCCEAIIFVFLGFSIFSKDHKW 287


>AF497823-1|AAM18101.1|  479|Caenorhabditis elegans putative Na-H
           exchanger isoform 1 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 281 DACSLTFKYCLKNTQLNCECILSSYYNFILFSLCSLW 171
           +   +T KY LK     CE I+  +  F +FS    W
Sbjct: 250 ERADITVKYTLKTLSSCCEAIIFVFLGFSIFSKDHKW 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,015,351
Number of Sequences: 27780
Number of extensions: 252629
Number of successful extensions: 616
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)