Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A07
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.47 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.7  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   7.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.7  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +1

Query: 238 YYSILNNNVCDIIG-LFYYNLTPTTLHFSIIFSYYYFTLSKVWCNPIQELHSHLKTNKTS 414
           YY  LN  +  + G L+Y++ T   + ++++   Y     +  C   + +       + S
Sbjct: 301 YYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKYRNAFKQTICCKTRIIGRRSWVTRES 360

Query: 415 SICWESSDHHRGYSFIQCS 471
            IC  SS      S  +CS
Sbjct: 361 QICNNSSSDKERNSSFKCS 379


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 522 PNGMRDVFKQLMEKEGPTALYKGVTPVMIRAFPANAAC 409
           P G  D   Q++    P  +  G TPV +    A+ AC
Sbjct: 334 PRGAADFTAQVIVLNHPGQISNGYTPV-LDCHTAHIAC 370


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 522 PNGMRDVFKQLMEKEGPTALYKGVTPVMIRAFPANAAC 409
           P G  D   Q++    P  +  G TPV +    A+ AC
Sbjct: 45  PRGAADFTAQVIVLNHPGQISNGYTPV-LDCHTAHIAC 81


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 522 PNGMRDVFKQLMEKEGPTALYKGVTPVMIRAFPANAAC 409
           P G  D   Q++    P  +  G TPV +    A+ AC
Sbjct: 334 PKGAADFTAQVIVLNHPGQISNGYTPV-LDCHTAHIAC 370


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 571 WHAYQPVSY 597
           W  YQP+SY
Sbjct: 77  WERYQPISY 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,683
Number of Sequences: 438
Number of extensions: 3413
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)