Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A06
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   0.14 
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    28   1.1  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    28   1.1  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   1.1  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    27   2.6  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   3.4  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   3.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   3.4  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    26   4.5  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    26   4.5  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   4.5  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    26   5.9  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    26   5.9  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   5.9  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   7.8  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/69 (18%), Positives = 34/69 (49%)
 Frame = -3

Query: 491  KIITTNPTIVKGNATYENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAM 312
            K +++    V   + Y N+V+ +NE  +++ +  +  + V+ +L+  I  L + +    +
Sbjct: 1213 KDVSSTSESVGERSNYLNMVALLNESNKSLRENLERNEEVITELREKIETLKTDLANFRL 1272

Query: 311  TEEPRHERL 285
             +E    +L
Sbjct: 1273 NKEQLESQL 1281



 Score = 26.2 bits (55), Expect(2) = 0.14
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -3

Query: 443  ENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAM 312
            ENL+  +N+   +++   +  ++   DL+N+ AQ  S+IE L +
Sbjct: 1330 ENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQSKIEQLEL 1373



 Score = 23.4 bits (48), Expect(2) = 0.14
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -3

Query: 644  LSQIENITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLEK 519
            + ++EN   + ++      + L ++T+T +D SR  N+L+ K
Sbjct: 1288 VKKLENSNEEYKRHNQEILLSLNSSTSTSSDASRLKNELVSK 1329


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -1

Query: 208 SYCCVSFYINY 176
           SYCCVS++INY
Sbjct: 34  SYCCVSYFINY 44


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = -3

Query: 443 ENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAMTEEPRHE----RLSKA 276
           E + S   E+ QNI+ + K+++  LND  +DI   +   E+LA  +E + +     ++  
Sbjct: 68  ETIESDTKEV-QNIKPKSKKKKKKLNDSSDDIEGKYFE-ELLAEEDEEKDKDSAGLINDE 125

Query: 275 QDSSPATNS 249
           +D SPA  S
Sbjct: 126 EDKSPAKQS 134


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/103 (22%), Positives = 48/103 (46%)
 Frame = -3

Query: 644 LSQIENITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLEKMLRILSYRPKIITTNPTI 465
           + ++E I  KL+K+   N       T  +A E+   N L+ ++ R   +  ++ T    +
Sbjct: 128 IQKLEIIEKKLDKSFRKNMEDELRITR-LASEN---NVLISRIDRTKRHFSELFTQKQML 183

Query: 464 VKGNATYENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLH 336
              N   EN      +IK+  +  +KER++ L+ ++    ++H
Sbjct: 184 QLQN---ENFKDDYEKIKEENKRLYKERKSFLSKIEKSACEIH 223


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = -3

Query: 539 TNDLLEKMLRILSYRPKIITTNPTIVKGNATYENLVSYVNEIKQNIEDRWKERQNVLNDL 360
           +NDL +  +  + +R  I++   ++ K         +   E+K NIE+ +K+ +     L
Sbjct: 46  SNDLRDMGIESVGHRIDILSAIQSMKKQQKDKLQQENKDQELK-NIEESYKKLEEKTEHL 104

Query: 359 QNDIAQLHSRIEVL 318
            +D   L  R+E L
Sbjct: 105 SDDNVSLEKRVEYL 118


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 7/147 (4%)
 Frame = -3

Query: 647 DLSQIENITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLEKMLRILS-------YRPK 489
           DL  I +   ++++ L N  V L   T   A ES K      K+ RIL        Y  K
Sbjct: 224 DLESIRSKALRVKQFLVNQTVSLEEGTLADAVESLKVYQT--KIARILREENEDEYYVQK 281

Query: 488 IITTNPTIVKGNATYENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAMT 309
           +++ N  ++       N    ++     +  +    ++ +    ND  Q  S I+++ +T
Sbjct: 282 LLSLNDLLINVIEECSNS-DLIHSGTNVVSSQPNVVESHVPPSSNDTKQESSLIDLMKLT 340

Query: 308 EEPRHERLSKAQDSSPATNSGSMFTEV 228
           EEP     S    + PA  S SM + +
Sbjct: 341 EEPAVPSPS-LPTNVPANQSLSMLSSL 366


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -3

Query: 629 NITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLEKMLRILSYRPKIITTNPTIVKGNA 450
           N+T   + +  N+ + L  +     +E  K+N LL + +R   +  K +  + + ++  A
Sbjct: 498 NVTLVNQVSAANDKIALLESK---LEEVEKSNTLLYEQMRFRDHYQKHVEPSSSHLQTAA 554

Query: 449 TYENLVS 429
            YEN +S
Sbjct: 555 AYENSIS 561


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 545 RKTNDLLEKMLRILSYRPK-IITTNPTIVKGNATYENLVSYVNEIKQNIEDRWKE 384
           ++  D L      L YRPK II TN      +  YEN VS  + ++ +I  + ++
Sbjct: 16  KRQEDALNTDSEDLIYRPKKIIKTNQEDAVHDLKYENFVSKNHVLQSDINGKKRD 70


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 193 SFYINYTKKIQF-SKDVYLLALAYCRETWRIPICKNSF 83
           S Y+NYT+ ++F  K  Y    AY R+ +R   C+ S+
Sbjct: 251 SIYLNYTRSLRFDDKPDY----AYLRKLFRDLFCRQSY 284


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/81 (24%), Positives = 40/81 (49%)
 Frame = -3

Query: 650 NDLSQIENITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLEKMLRILSYRPKIITTNP 471
           NDL  ++N +++  KTL N++  L    + + DE      L E  + + S  P ++ +  
Sbjct: 99  NDLHPLDNDSTRTSKTLKNSSEVL--TASKLTDEGNSKPLLEEGEVAVSS--PILLDSKD 154

Query: 470 TIVKGNATYENLVSYVNEIKQ 408
            I+    + +NLV   ++ K+
Sbjct: 155 VIMGVTKSSKNLVEDAHKSKK 175


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 590 NVKLYNATNTIADESRKTNDLLE 522
           N K +N ++ I++E  K+NDLLE
Sbjct: 62  NDKTFNESDVISNERFKSNDLLE 84


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
 Frame = -3

Query: 650 NDLSQIENITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLEKMLRILSYRPKIITTNP 471
           N   Q+   + KLE++L + + K+         E  K +      L +     + + TN 
Sbjct: 90  NKKIQLREQSRKLEESLLSYHKKV--------KEMEKQHRSASSKLELAKLSAQQLQTNV 141

Query: 470 TIVKGNATYENLVSYVNEIKQN---IEDRWKERQNVLNDLQND---IAQLHSRI 327
            +++     E L   ++E K     I ++  +  ++LND QND   IA+ HS +
Sbjct: 142 NVLRSQNNPEILQDMISETKDCRSLIAEQLLQSASLLNDFQNDSDRIAKNHSSL 195


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -3

Query: 419 EIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAMTEEPRHERLSK 279
           +I+Q+ ++ W  + N  N+L+    +LH +++ L  + +   E LSK
Sbjct: 538 DIRQSFKENWVVKSNFNNNLR----KLHEKLQSLFASYDKLQEDLSK 580


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 157 KIEFFLYNLYKMKHNNMISINATHTSVNIEPEFVA 261
           K+E  L  L    HN+M+ ++    S+NIE + +A
Sbjct: 539 KLERELQQLKLSSHNSMLQLDQRIQSINIEADQIA 573


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 560 IADESRKTNDLLEKMLRILSYRPKIITTNPTIVKGNATYENLVSYVNEI 414
           ++DE RK   LLE  L ++ Y     T +  I+      + +V Y+NE+
Sbjct: 22  LSDEERKILSLLEAALEVIDY-----TGHVDIISYTTRTKLMVKYLNEM 65


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 187 YINYTKKIQFSKDVYLL 137
           YINY  K+ F +D YL+
Sbjct: 532 YINYANKVAFIRDPYLI 548


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 22/109 (20%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
 Frame = -3

Query: 644 LSQIENITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLEKMLRILSYRPKIIT---TN 474
           +S++E + +  E+ +     KL +    +     + NDL  K+ R   YR K+ T    N
Sbjct: 243 ISELEKLKAAQEERIE----KLSSNNRNVEILKEEKNDLESKLYRFEEYRDKVATLELEN 298

Query: 473 PTIVKGNATYENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRI 327
             I     ++++L++      + + ++    QN   +L   ++ L S++
Sbjct: 299 EKIQTELNSWKSLITNELPTPEAVSNKLVFLQNTNANLGERVSSLESQL 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,509
Number of Sequences: 5004
Number of extensions: 46608
Number of successful extensions: 173
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)