Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A06
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.5  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 440 NLVSYVNEIKQNIEDRWKERQNVLNDL 360
           N   Y+N ++ N+ +   +R+NVL+ L
Sbjct: 430 NRSEYLNHLRANVAEGRNQRKNVLDRL 456


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -3

Query: 635 IENITSKLEKT--LTNNNVKLYNATNTIADESRKT 537
           I+NI  +++    L+NN+V LY   NT+++ +++T
Sbjct: 359 IQNIIQEMKNDVLLSNNDVYLYQ--NTMSNNNQRT 391


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -3

Query: 635 IENITSKLEKT--LTNNNVKLYNATNTIADESRKT 537
           I+NI  +++    L+NN+V LY   NT+++ +++T
Sbjct: 397 IQNIIQEMKNDVLLSNNDVYLYQ--NTMSNNNQRT 429


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 626 ITSKLEKTLTNNNVKLYNATNTIADESRKTND 531
           I+S   KT+ NNN   YN  N   + +   N+
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNN 346


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 489 NNNN*SNDCKR 457
           NNNN +N+CK+
Sbjct: 101 NNNNYNNNCKK 111


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 489 NNNN*SNDCKR 457
           NNNN +N+CK+
Sbjct: 101 NNNNYNNNCKK 111



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 626 ITSKLEKTLTNNNVKLYNATN 564
           I+S   KT+ NNN   YN  N
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNN 102


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 489 NNNN*SNDCKR 457
           NNNN +N+CK+
Sbjct: 101 NNNNYNNNCKK 111



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 626 ITSKLEKTLTNNNVKLYNATN 564
           I+S   KT+ NNN   YN  N
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNN 102


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 489 NNNN*SNDCKR 457
           NNNN +N+CK+
Sbjct: 101 NNNNYNNNCKK 111



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 626 ITSKLEKTLTNNNVKLYNATN 564
           I+S   KT+ NNN   YN  N
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNN 102


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 626 ITSKLEKTLTNNNVKLYNATN 564
           I+S   KT+ NNN   YN  N
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNN 102


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 626 ITSKLEKTLTNNNVKLYNATN 564
           I+S   KT+ NNN   YN  N
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNN 102


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 372 NILSFFPTIFNVLLDFVHIGH 434
           N+ S F  IFN++   + IGH
Sbjct: 271 NMASVFMRIFNLICMMLLIGH 291


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 372 NILSFFPTIFNVLLDFVHIGH 434
           N+ S F  IFN++   + IGH
Sbjct: 239 NMASVFMRIFNLICMMLLIGH 259


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 17/74 (22%), Positives = 26/74 (35%)
 Frame = -3

Query: 482 TTNPTIVKGNATYENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAMTEE 303
           TT  T     A      +    IKQ    R    QN  + LQ+   Q H R       ++
Sbjct: 111 TTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQ 170

Query: 302 PRHERLSKAQDSSP 261
            R ++  + +   P
Sbjct: 171 QRQQQRQEERRLRP 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,574
Number of Sequences: 438
Number of extensions: 3646
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)