Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_A05
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 74 2e-14
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 60 3e-10
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 33 0.040
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 29 0.49
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 29 0.65
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 27 2.0
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 26 4.6
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 4.6
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 6.0
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 74.1 bits (174), Expect = 2e-14
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Frame = -2
Query: 366 YTRTVPNDKVFNKFSKRVARHPEQVLRY---DRGGLP-LWITSNNDSLVH-IPKCEYCNG 202
YT+ D F KF KR++R P+Q++RY P LW NN+ + IP C C
Sbjct: 153 YTKA-KGDVSFLKFQKRLSRAPDQIMRYYHATSNEFPGLWC--NNECIPSSIPNCA-CGA 208
Query: 201 ERQFEFQIMPQLLNFLDVGVEL-NSIDWGVLAIYTCKASCNKGSAYMLE 58
+RQ EFQI+P L++ +++ N++DWG+L+IY C ASC+ + + E
Sbjct: 209 KRQLEFQILPTLISSMNIDHSAKNALDWGILSIYVCSASCDLANCGLAE 257
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 60.1 bits (139), Expect = 3e-10
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Frame = -2
Query: 345 DKVFNKFSKRVARHPEQVLRYDRGGLPLWITSNNDSLVH------------IPKCEYCNG 202
+K F FS++++ +P Q LRY+RGG PL + S D L +P C C
Sbjct: 282 EKTFRLFSEKISHNPTQCLRYERGGTPL-LASGRDKLGQQLKSVTNFGKSPVPLCPLCKS 340
Query: 201 ERQFEFQIMPQLLNFLDVGVELNSIDWGVLAIYTCKASCN 82
R FE Q+MP ++ L+ + +W + + TC CN
Sbjct: 341 PRLFEMQLMPHAISILNDEI----AEWSTILVATCSMDCN 376
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 33.1 bits (72), Expect = 0.040
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 669 CSRCKKMYYCSRKHQIIDWQKGHKEQCPQLQS 574
C+ CK ++YCS+ Q DW HK +C LQ+
Sbjct: 62 CAACKIIHYCSKGCQKADW-PFHKLECKALQA 92
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 675 AHCSRCKKMYYCSRKHQIIDWQKGHKEQC 589
A C RC++ YCS++ Q W GH C
Sbjct: 496 AKCRRCRRTKYCSKECQHQAW-PGHSRWC 523
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 29.1 bits (62), Expect = 0.65
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 345 DKV-FNKFSKRVARHPEQVLRYDRGGLPLWITSNNDSLVHIPKCEYCNGERQ 193
DKV F K ++ + P+ + GG+PL + + DSL + K C GE Q
Sbjct: 1108 DKVEFEKNYEKSKKGPDVIANALVGGIPLSLKTKEDSLYELSKFSQC-GEDQ 1158
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 123 SLCCSILHQHLRNSAVAALFGI 188
SLC ++ HLRNS LFG+
Sbjct: 692 SLCIPLIEGHLRNSLEEILFGV 713
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 292 NLFWVSSNPFTKFIKHFVIRYCSCVFF*FTF 384
N F PF KF+ ++ +Y S + + ++F
Sbjct: 22 NQFLCIKGPFEKFVGRYIYKYISILIYLYSF 52
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 168 LLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEYMIKQDLSD 31
LL+ LD E+ W AI ASC +G Y+L+ + L D
Sbjct: 40 LLSRLD-NPEIKERSWACSAISNIIASCTEGRLYLLKNGLVSKLID 84
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 702 CDVCGARGPAHCSRCKKMYYCSRKHQII 619
C+VCG G C C YCS+ ++I
Sbjct: 102 CNVCGYWGKYACQNCGTS-YCSKGCEVI 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,450
Number of Sequences: 5004
Number of extensions: 56568
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -