Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_A05
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 137 7e-33
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 114 6e-26
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 52 3e-07
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 46 3e-05
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879... 45 7e-05
04_04_1321 + 32634471-32634566,32635102-32635193,32635290-326355... 39 0.003
01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731 39 0.004
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 38 0.006
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959 34 0.13
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 33 0.17
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056... 29 4.8
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 29 4.8
07_02_0032 - 12037507-12038435,12038475-12038586,12038912-120391... 28 8.3
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 137 bits (332), Expect = 7e-33
Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 5/222 (2%)
Frame = -2
Query: 705 LCDVCGA-RGPAHCSRCKKMYYCSRKHQIIDWQKGHKEQCPQLQSGDIVSTNNFK-ITKA 532
+C CG +G CS CKK YCS KHQ + W+ GHK C QL S S++ F + K
Sbjct: 191 VCHWCGTWKGDKLCSSCKKARYCSEKHQTLHWRSGHKSDCLQLISSSEASSSIFPAVGKV 250
Query: 531 GQSVLFKEWELIVXXXXXXDPNNTDINQEMEKLNKMMQEKKVGXXXXXXXXXXXEYTRTV 352
S + E+E+ + + ++ D E +K + ++ G ++
Sbjct: 251 PASKSWPEYEIAIDYEGAFNSDSCD-----ESNSKSLVMQRPGKPDDMMQSWMDQFEADA 305
Query: 351 PNDKVFNKFSKRVARHPEQVLRYDR--GGLPLW-ITSNNDSLVHIPKCEYCNGERQFEFQ 181
N K + F +RV+R P+QVLRY R PLW +++ S IP C YC G +EFQ
Sbjct: 306 DN-KCWASFQERVSRAPKQVLRYCREENAKPLWALSAGCPSNADIPSCSYCRGPLCYEFQ 364
Query: 180 IMPQLLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEY 55
IMPQLL + V E +S+DW + +YTCK SC++ +Y E+
Sbjct: 365 IMPQLLYYFGVKNEPDSLDWATIVVYTCKGSCDQNVSYKEEF 406
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 114 bits (275), Expect = 6e-26
Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 4/214 (1%)
Frame = -2
Query: 681 GPAHCSRCKKMYYCSRKHQIIDWQKGHKEQCPQLQSGDIVSTNNFKITKAGQSVLFKEWE 502
G CSRC+K YCS+KHQ + W+ HK +C Q+ S K ++ E+
Sbjct: 150 GEKVCSRCRKSSYCSKKHQELHWRAKHKNECHQISGSHNASAIMPDAGKVFAGNIWPEYM 209
Query: 501 LIVXXXXXXDPNNTDINQEMEKLNKMMQEKKVGXXXXXXXXXXXEYTRTVPNDKVFNKFS 322
++ + E ++++ E+ ++ +++ + F
Sbjct: 210 VV------DETEKVSCFASCENRSELLMEQGQSEEDDMTASLMDQF-EVDDDNRCWASFL 262
Query: 321 KRVARHPEQVLRYDRGGL--PLWITSNNDSLVHI--PKCEYCNGERQFEFQIMPQLLNFL 154
+R++R +QVLRY R PLW+ + SL + P C YCNG +EFQIMPQLL++
Sbjct: 263 ERISREQDQVLRYCRESTAKPLWVVYSG-SLTNAAKPSCIYCNGPLCYEFQIMPQLLHYF 321
Query: 153 DVGVELNSIDWGVLAIYTCKASCNKGSAYMLEYM 52
V E +S+DW + +YTCK SC++ +YM E++
Sbjct: 322 HVENEPDSLDWATIIVYTCKGSCDQNVSYMEEFV 355
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = -2
Query: 702 CDVCGARGPAHCSRCKKMYYCSRKHQIIDWQKGHKEQCPQ 583
C C CSRCK + YCS K QII W++GHK+ C Q
Sbjct: 32 CATCHGPAKTRCSRCKSVRYCSGKCQIIHWRQGHKQTCQQ 71
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -2
Query: 702 CDVCGARGPAHCSRCKKMYYCSRKHQIIDWQKGHKEQCPQLQ 577
C CG CS CK++ YCS+ Q WQ GHK +C Q++
Sbjct: 105 CAACGYIATKKCSGCKRVRYCSQGCQSKHWQSGHKFKCKQMK 146
>08_02_1014 -
23586552-23587224,23587402-23587463,23587735-23587950,
23588125-23588209,23589232-23589389,23589505-23589625,
23590081-23590243,23590330-23590415,23590660-23590742,
23590816-23591677,23593266-23593693
Length = 978
Score = 44.8 bits (101), Expect = 7e-05
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -2
Query: 705 LCDVCGARGPAHCSRCKKMYYCSRKHQIIDWQKGHKEQC 589
+C VC C +CK + YCS K QI W++GHK +C
Sbjct: 122 VCAVCFRPTTFRCKQCKAVKYCSFKCQIAHWRQGHKNEC 160
>04_04_1321 +
32634471-32634566,32635102-32635193,32635290-32635585,
32635665-32635863,32636019-32636223,32637001-32637093
Length = 326
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/96 (33%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Frame = -2
Query: 366 YTRTVPNDKVFNKFSKRVARHPEQVLRYDRGGLPLWITSNNDSLVHIPKCEYCNGERQFE 187
Y R + D+ F KF KR Y GG PL +N L C+ C RQ+E
Sbjct: 212 YDRAIGADRTFLKFKKR----------YSYGGKPLLAATN---LQDSGTCQLCGSPRQYE 258
Query: 186 FQIMPQLLNFLDVGVELNS------IDWGVLAIYTC 97
Q+M L FL + +S W L IYTC
Sbjct: 259 LQLMSPLSYFLHEAGDGSSDYAPDGWTWLTLIIYTC 294
>01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731
Length = 369
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 669 CSRCKKMYYCSRKHQIIDWQKGHKEQC 589
CS C YCSR Q +DW++ HK QC
Sbjct: 329 CSVCGAANYCSRACQALDWKRAHKAQC 355
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 705 LCDVCGARGPAHCSRCKKMYYCSRKHQIIDWQKGHKEQCPQL 580
+ + C C C + YCSR HQ + W HKE+C +L
Sbjct: 42 VAEPCAGEARRRCGGCGAVAYCSRAHQTVHW-GFHKEECARL 82
>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
Length = 395
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 669 CSRCKKMYYCSRKHQIIDWQKGHKEQC 589
CS C + YCSR Q + W+ HK +C
Sbjct: 342 CSVCGVVNYCSRACQALHWKTAHKAEC 368
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 669 CSRCKKMYYCSRKHQIIDWQKGHKEQC 589
CS C + YCSR Q + W+ HK C
Sbjct: 322 CSVCSGVIYCSRACQAMHWKVAHKSAC 348
>03_05_0841 -
28104977-28105142,28105439-28105502,28105586-28105655,
28105743-28105852,28106217-28106295,28106610-28106691,
28106791-28106879,28107351-28107425,28107728-28107862,
28108018-28108163,28108380-28108491
Length = 375
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 702 CDVCGA-RGPAHCSRCKKMYYCSRKHQIIDWQKGHKEQC 589
CD C A R CS C+ +YC Q +W K H+ +C
Sbjct: 60 CDNCFASRNLRKCSVCRVAWYCGSACQREEW-KLHQLEC 97
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Frame = -2
Query: 702 CDVCGARGPAHCSRCKKM------YYCSRKHQIIDWQKGHKEQCPQLQSGD 568
CDV G C CKKM + S KH ++ W + +QSG+
Sbjct: 200 CDVLIGSGQWQCVICKKMNGSEGEFVVSSKHDLLQWPELASSAIDYVQSGN 250
>07_02_0032 -
12037507-12038435,12038475-12038586,12038912-12039199,
12039395-12039622
Length = 518
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 45 VLSYTPTCMQILCYN*LYKYK*PVLPSLCCSILHQH 152
V+ T C ++ + L K K P P++ CSI QH
Sbjct: 303 VVKLTEQCSNVILHKLLEKKKDPGCPTITCSIGAQH 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,687,418
Number of Sequences: 37544
Number of extensions: 318779
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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