Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A05
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 681 GPAHCSRCKKMYY 643
           GP+HC  C+  +Y
Sbjct: 190 GPSHCVVCQNFFY 202



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 612 QKGHKEQCPQLQ 577
           +K H+ QCP LQ
Sbjct: 305 RKSHESQCPMLQ 316


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 350 LMTKCLINLVKGLLDTQNK 294
           LM  CL+N+V G  DT  K
Sbjct: 322 LMEYCLVNIVLGDSDTPPK 340


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 258 ITSNNDSLVHIPKCEYCNGE 199
           + SNND +  + KC+  N E
Sbjct: 552 LASNNDRIRQVTKCKATNEE 571


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 258 ITSNNDSLVHIPKCEYCNGE 199
           + SNND +  + KC+  N E
Sbjct: 552 LASNNDRIRQVTKCKATNEE 571


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 258 ITSNNDSLVHIPKCEYCNGE 199
           + SNND +  + KC+  N E
Sbjct: 552 LASNNDRIRQVTKCKATNEE 571


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -2

Query: 651 MYYCSRKHQIIDW----QKGHKEQCPQLQSGDIVSTNNFKITKAGQSVLFKEWELI 496
           +Y C   H  + W    Q+G++++C     G + S + + + +   +     WE +
Sbjct: 82  LYVCRVLHTTV-WVAGAQRGNEQRCTVTMHGTVQSYDKYDLLENVNNAARINWEYL 136


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 468 NNTDINQEMEKLNKM 424
           NN   NQ+ EKLN++
Sbjct: 64  NNHHCNQDTEKLNQL 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,806
Number of Sequences: 438
Number of extensions: 4045
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)