Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A03
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   2.1  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.7  
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M...    25   8.4  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   8.4  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = +2

Query: 533  EADGQRAGSK*SSALVNQIIDSGQATVGIDLMALYNR---LFTDDSHVGLG----AARIG 691
            E DG           VN ++D   A VG D + L+ R   L  D  H+  G    A +I 
Sbjct: 875  EVDGWEVEDLAPEEAVNDVVDDASAFVGADEIFLWKRNSPLAAD--HIAAGDFESAMKIL 932

Query: 692  DREVGXANAGP 724
            +++VG  N  P
Sbjct: 933  NKQVGAINFSP 943


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 524 NRNRFLVLTGELDP*SQDRTRTQTLGDPG 438
           N  RFL+L GE++  +Q + R  + GD G
Sbjct: 259 NHKRFLILQGEVESIAQMKPRAISEGDDG 287


>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 452 LGDPGADDQRPHFP*TLTTRKSPRWCTFRSKDRPALKLREDNA 324
           + DPG       +   L   +S  W TF + DRP LK RE  A
Sbjct: 21  VADPGVVSVSKSYADFLRVYQS--WNTFANPDRPNLKKREFEA 61


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 101 LIEFSQTNMYE*MSRIKSFC 42
           +I+F  +N+Y   SR+++FC
Sbjct: 282 IIDFGLSNLYRRQSRLRTFC 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,789
Number of Sequences: 5004
Number of extensions: 56390
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)