Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A03
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0675 - 18571495-18572055,18572465-18572966,18573774-185738...    31   0.71 
01_06_1823 - 40140405-40140965,40141305-40141803,40143830-40143960     31   1.2  
06_03_0779 - 24529445-24529927                                         29   3.8  
08_01_0671 - 5781393-5782503,5782572-5782675                           28   8.7  

>04_03_0675 -
           18571495-18572055,18572465-18572966,18573774-18573829,
           18574140-18574142
          Length = 373

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -1

Query: 578 PKRWTTWSRR--VDHLLHSDNRNRFLVLTGELDP*SQDRTRTQTLG---DPGADD 429
           P  W  W+R    +   H D  N+++ LTG +D    ++T    +G   DPG ++
Sbjct: 139 PTTWAVWTRAWTAEENRHGDLLNKYMYLTGRVDMKQIEKTIQYLIGSGMDPGTEN 193


>01_06_1823 - 40140405-40140965,40141305-40141803,40143830-40143960
          Length = 396

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 578 PKRWTTWSRR--VDHLLHSDNRNRFLVLTGELDP*SQDRTRTQTLGDPGADDQRPHFP 411
           P  W  W+R    +   H D  N++L LTG +D    ++T    +G  G D +  + P
Sbjct: 162 PTAWAVWTRAWTAEENRHGDLLNKYLYLTGRVDMRQIEKTIQYLIGS-GMDPRTENNP 218


>06_03_0779 - 24529445-24529927
          Length = 160

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 633 STIVSSPTTVMW-DWAQHESGTVRLAKLM 716
           ST+ SSPTT  W  W    S T+ +AKL+
Sbjct: 8   STVTSSPTTYSWITWRIRRSLTLGIAKLL 36


>08_01_0671 - 5781393-5782503,5782572-5782675
          Length = 404

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 569 WTTWSR--RVDHLLHSDNRNRFLVLTGELDP*SQDRTRTQTLG 447
           W  W R    +   H D  NR++ L+G LD    +RT  + +G
Sbjct: 165 WARWIRGWSAEENRHGDVLNRYMYLSGRLDMRQVERTVHRLIG 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,327,115
Number of Sequences: 37544
Number of extensions: 370547
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)