Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_A03
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 35 0.068
AC084197-5|AAO38574.1| 335|Caenorhabditis elegans Serpentine re... 29 3.4
Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 29 4.5
Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical pr... 29 4.5
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 29 4.5
Z48638-6|CAA88567.1| 541|Caenorhabditis elegans Hypothetical pr... 28 7.9
U52002-5|AAB37729.2| 534|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 673 QSHMT--VVGEETIVECHKIYANGCLPRVYYLVNQSAGLLGAGALTICFIQIIGIVFSFS 500
+SHM + + + IY GCLP++ +N + L+ + I IQ++GI F+ +
Sbjct: 233 ESHMAAHLAAQRVMAHTASIYTEGCLPKLQLWLNNNMLLVAVSMVIIAIIQVLGICFAQN 292
Query: 499 LAS 491
L S
Sbjct: 293 LKS 295
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 34.7 bits (76), Expect = 0.068
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = -2
Query: 697 TVPDSCCAQSHMTVVGEETIVECHKIYANGCLPRVYYLVNQSAGLLGAGALTICFIQIIG 518
T+PDSCC + E ++ GC+ V V ++ ++G + IQ++G
Sbjct: 158 TIPDSCCIEEIEGCARENA-----PLFEPGCIHSVEQWVLKNGAMVGGICAVLAAIQLVG 212
Query: 517 IVFSFSLASS 488
+ F+ L+ S
Sbjct: 213 VCFACCLSKS 222
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 622 IYANGCLPRVYYLVNQSAGLLGAGALTICFIQIIGIVFSFSL 497
I GC VY V+ S L+ + +C +Q++GIV S +L
Sbjct: 232 INTRGCADAVYESVSSSLSLIVGVCVVLCIVQLLGIVLSMTL 273
>AC084197-5|AAO38574.1| 335|Caenorhabditis elegans Serpentine
receptor, class v protein26 protein.
Length = 335
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 237 RSTEVILISVMFSLMLFSHDNRYVFFVF*RNTRFISRNKFETFSITYRVF 88
R+T + L+ V F ++ S +FF +NTR +SR+ + ++VF
Sbjct: 178 RNTTMALLVVSFVCIISSFAYGALFFFIRKNTRILSRSLRREVRLAFQVF 227
>Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 697 TVPDSCCAQSHMTVVGEETIVECHKIYANGCLPRVYYLVNQSAGLLGA 554
TV S + +H +VGE + A G RV + S+G+LGA
Sbjct: 42 TVQSSGSSSNHAPIVGESPLGTVSSTMATGDTGRVGNVTYMSSGMLGA 89
>Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 697 TVPDSCCAQSHMTVVGEETIVECHKIYANGCLPRVYYLVNQSAGLLGA 554
TV S + +H +VGE + A G RV + S+G+LGA
Sbjct: 42 TVQSSGSSSNHAPIVGESPLGTVSSTMATGDTGRVGNVTYMSSGMLGA 89
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 697 TVPDSCCAQSHMTVVGEETIVECHKIYANGCLPRVYYLVNQSAGLLGA 554
TV S + +H +VGE + A G RV + S+G+LGA
Sbjct: 42 TVQSSGSSSNHAPIVGESPLGTVSSTMATGDTGRVGNVTYMSSGMLGA 89
>Z48638-6|CAA88567.1| 541|Caenorhabditis elegans Hypothetical
protein ZK892.3 protein.
Length = 541
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 463 RVRSWLYGSSSPVRTRKRFRLSE*SRWSTRRLQVV 567
++ W YGS + ++RF+L S W+ R+ VV
Sbjct: 174 QIVGWSYGSEM-ISAKRRFQLRTFSNWANARILVV 207
>U52002-5|AAB37729.2| 534|Caenorhabditis elegans Hypothetical
protein F08B4.5 protein.
Length = 534
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Frame = -1
Query: 512 FLVLTGELDP*SQDRTRTQTLGDPGADD-------QRPHFP*TLTTRKSP-RWCTFRS 363
F L +L P +D +TQ + PG DD RPH P L SP CTF S
Sbjct: 331 FRWLANQLTPLRKDYEKTQFIFVPGPDDPFVDTVLPRPHLPSLLFKHISPIISCTFAS 388
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,900
Number of Sequences: 27780
Number of extensions: 317145
Number of successful extensions: 810
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -