Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A03
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    36   5e-04
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   5.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 694 VPDSCCAQSHMTVVGEETIVECHKIYANGCLPRVYYLVNQSAGLLGAGALTICFIQIIGI 515
           +P SCC         E         Y NGC+  +   V  +  + G+ A+ I  +++IGI
Sbjct: 159 IPASCCNSP------ENNTCSISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGI 212

Query: 514 VFSFSLASS 488
           + +  LA+S
Sbjct: 213 ICALCLANS 221


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -3

Query: 243 CPRSTEVILISVMFSLMLFSHD-NRYVFFVF*RNTRFIS--RNKFETFSITYRVFTNKYV 73
           C R   ++LIS +F + L S D  R V  +F    + I   +N  E   + + +   + +
Sbjct: 5   CSRLGRILLISAVFCVGLCSEDEERLVRDLFRGYNKLIRPVQNMTEKVHVNFGLAFVQLI 64

Query: 72  RINVTNKIL 46
            +N  N+I+
Sbjct: 65  NVNEKNQIM 73


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 52  FIRDIYSYIFVCENSISNRKSFKFIT*NETCVALKNK 162
           FI+DIY  +   E +    K ++F   N   V L+ +
Sbjct: 354 FIKDIYETVIKLEGASFRSKPYRFGIQNGDYVVLETE 390


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 52  FIRDIYSYIFVCENSISNRKSFKFIT*NETCVALKNK 162
           FI+DIY  +   E +    K ++F   N   V L+ +
Sbjct: 60  FIKDIYETVIKLEGASFRSKPYRFGIQNGDYVVLETE 96


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 398 TRKSPRWCTFRSKDRPALKLREDNAYIKTIK 306
           T K  RWCT+   D    K     AY + ++
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 398 TRKSPRWCTFRSKDRPALKLREDNAYIKTIK 306
           T K  RWCT+   D    K     AY + ++
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 398 TRKSPRWCTFRSKDRPALKLREDNAYIKTIK 306
           T K  RWCT+   D    K     AY + ++
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVR 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,524
Number of Sequences: 438
Number of extensions: 3871
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)