Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_A01
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   2.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.2  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 89  AASTCPCSPSALLPSGTAARTLAVISLILARASS 190
           A STC  S S+L  SGT + T    S+I  R SS
Sbjct: 110 ACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSS 143


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 56  SSNVVNK*QRGAASTCPCSPSALLPSGTA 142
           S  V  K Q G +ST P +P+ +LP+ +A
Sbjct: 485 SPKVAPKFQGGRSSTAPSTPNKVLPAASA 513


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 307 APQQHAELQRXHQVLHQEQSAQ 372
           APQQH +LQR   +L   Q  Q
Sbjct: 129 APQQHPQLQRMMPILSSNQPIQ 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,292,144
Number of Sequences: 5004
Number of extensions: 15881
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)