Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P24
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...   172   5e-44
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    33   0.044
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac...    29   0.55 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   2.2  
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    27   2.9  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    26   6.7  

>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score =  172 bits (418), Expect = 5e-44
 Identities = 89/174 (51%), Positives = 123/174 (70%), Gaps = 10/174 (5%)
 Frame = +2

Query: 269 TSMKNLIKICIPPLDKSSHKGQAGRIGVIGGSLEYTGAPYFAGISALKVGADLAHIFCSS 448
           T++   +K  IPPL  + HKGQAGR+GV GG   YTGAPY++ +S++  G+D +HIFC  
Sbjct: 9   TNLLTRVKRIIPPLLDTFHKGQAGRVGVFGGCQHYTGAPYYSSMSSMLFGSDQSHIFCEK 68

Query: 449 VASAVIKSYSPELIVHPLL---DK---QDAVEE----ILPWFDRLHSIVIGPGLGRDWQT 598
            A+ VIKSYSP+LIVHP L   DK   +D+V++    I P   RLH+IVIGPGLGRD   
Sbjct: 69  EAANVIKSYSPDLIVHPFLREKDKAGPEDSVDKCFELIKPMMGRLHAIVIGPGLGRDEWM 128

Query: 599 FDIIAKLIEVIKQKKIPIIIDADGLFLITEKPNLIKDFDSPVILTPNKIXFERL 760
            +I+AK+IE  ++  +P++IDADGL+LI ++P L+  + + VILTPN I F+RL
Sbjct: 129 QEIMAKVIEYARKNDMPMVIDADGLWLIQQRPELVSGYHN-VILTPNVIEFKRL 181


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 485 LIVHPLLDKQDAVEEILPWFDRLHSIVIGPGLGRDWQ--TFDIIAKLIEVIKQKKIPI 652
           L+V P  D++D  EEI+   + L   +   G+G   Q  T   +  L+E +KQ KIP+
Sbjct: 801 LVVGPDDDEEDLAEEIMEDLENLLGRIDTSGIGVSVQASTLGSLEALLEFLKQMKIPV 858


>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
           Fba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 377 GAPYFAGISALKVGADLAHIFCSSVASAVIKSYSPELIVHPLLDKQDAVEEILPWFD 547
           GA +FAG  +   G   A I  S  A+  I+S +P   V  ++      +++LPW D
Sbjct: 64  GAHFFAGKESSNEGQK-ASIAGSIAAAHYIRSIAPFFGVPVVMHSDHCAKKLLPWMD 119


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 620 IEVIKQKKIPIIIDADGLF-LITEKP 694
           +E IKQ KIP  I+ DGLF LIT  P
Sbjct: 293 VETIKQHKIP-AINEDGLFYLITHLP 317


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 608 IAKLIEVIKQKKIPIIIDADGLFLITEKPNLIKDFDSPVILTPNK 742
           +  LIE  K K + I  D D + L+   P L K    P  +  NK
Sbjct: 139 VVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNK 183


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 488 IVHPLLDKQDAVEEILPWF 544
           +V+PLL +Q  VEE   WF
Sbjct: 480 LVNPLLQRQQKVEEANKWF 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,395
Number of Sequences: 5004
Number of extensions: 58601
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)