Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P24
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0945 - 29070388-29072024,29072117-29072210                       30   2.3  
11_03_0085 - 9717360-9717390,9717478-9717603,9718600-9718666,971...    28   7.1  
02_02_0135 + 7096911-7098440                                           28   7.1  
10_08_0393 + 17517511-17517777,17518913-17518987,17519080-175191...    28   9.3  
03_03_0099 + 14400651-14400936,14403705-14403731,14403956-144042...    28   9.3  

>03_05_0945 - 29070388-29072024,29072117-29072210
          Length = 576

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
 Frame = +2

Query: 314 KSSHKGQAGRIGVIGGSLEYTGA----PYFAGISALK-VGADLAHIFCSSVASAVIKSYS 478
           + +H+G  GR   IG      GA    P   G++ LK V  DL+ +     A AVI+ Y 
Sbjct: 223 RPTHRGMWGR--GIGAGTFCCGAVGLSPREQGMACLKNVDLDLSAMPTLEQAHAVIRHYG 280

Query: 479 PELIVHPLLDKQDAVEEILPWF 544
           P L  HP   K+  +   + WF
Sbjct: 281 PTLYFHP---KEVYLPSSVSWF 299


>11_03_0085 -
           9717360-9717390,9717478-9717603,9718600-9718666,
           9718770-9718831,9718904-9719094,9720133-9720268,
           9720760-9720851,9721231-9721413
          Length = 295

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 665 DGLFLITEKPNLIKDFDSPVILTPNKIXFERL 760
           DGLFLIT   +L++  +   ILTPN   ++RL
Sbjct: 147 DGLFLITNNLSLVEG-NLLAILTPNVYEYKRL 177


>02_02_0135 + 7096911-7098440
          Length = 509

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 296 CIPPLDKSSHKGQAGRIGVIGGSLEYTGAPYFAG-ISALKVGADLAHIFCSSVAS 457
           C     K S    +   GV GGS    G P  AG +SA    ++L+   CS  +S
Sbjct: 140 CSTSARKPSCNWSSSNAGVHGGSYYLAGVPEAAGFVSAAAAASELSLSLCSKSSS 194


>10_08_0393 +
           17517511-17517777,17518913-17518987,17519080-17519133,
           17519235-17519300,17519383-17519441,17520143-17520177,
           17520527-17520616,17520684-17520730,17520817-17520917,
           17521259-17521323,17521819-17522135,17522418-17522481,
           17522565-17522740,17523386-17523487,17523704-17523847,
           17523937-17524032,17524357-17524458,17524740-17524835
          Length = 651

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
 Frame = +2

Query: 224 LKSFSLIRHRYNMDPTSMKNLIKICIPPLDKSSH--KGQAGRIG-VIGGSLEYTGAPYFA 394
           L+   L+    N D     +  K+ IP + K S   K   G+   ++G +LE     YF 
Sbjct: 525 LEKVPLLERFVNGDDAFRNSRFKL-IPYISKGSWIVKQSVGKKACLVGQALEIN---YFR 580

Query: 395 GISALKVGADLAHIFCSSVASAVIKSYSPELIVHPLLDKQDAVEEILPWF 544
           G + L++G D+     +    +++  Y   L++      Q   +E LP F
Sbjct: 581 GSNYLELGVDIGSSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEF 630


>03_03_0099 +
           14400651-14400936,14403705-14403731,14403956-14404236,
           14404423-14404512,14405660-14406100
          Length = 374

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 215 LILLKSFSLIRHRYNMDPTSMKNLIKICIPPLDKSSH 325
           L+LL+    +RHR  ++P    + +K+ + P   SSH
Sbjct: 154 LVLLEGTDWVRHRRVINPAFNMDKLKVTVTPPSISSH 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,611,288
Number of Sequences: 37544
Number of extensions: 322725
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)